Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | DLSVYQLVMGVQVPPKPLSLSPATLLSLVRAQIDLLIEQQIAATLWVKLPPEKIWQSELARYQSSVGASSIIYTCQIDENEKQGAGEDDEAGEEKTSSSFSSTHHVTVHLTPDSQLRRENFLMVLSPQFCSLILAHR |
1 | 1vdmG | 0.08 | 0.07 | 2.64 | 0.70 | SPARKS-K | | --------------MDKVYLTWWQVDRAIFALAEKLREYKPD--VIIGVARG--GLIPAVRLSHILGDIP-LKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVKKLGAKEIKIACLAMKPWTSVVPDYY |
2 | 3ijmA | 0.09 | 0.07 | 2.50 | 0.62 | FFAS-3D | | PISLKTLVQEDDIGVNAPIIHQSVIARLTAGLYPLYQSKKIPAKVIIEVCQNSGLKHDTSKIVKLIEDNLEGFVFN-----------------------YKTQQWLRYRLGDGGVATNSSFS--------------- |
3 | 3lubA | 0.18 | 0.13 | 4.29 | 0.29 | HHpred | | ---------GQRELPFCIHTRYATQQAILEDIVSSLHVQGFRKLLILSGHGGNNFKG-IRDLAFEYP-DFLIAAANWFEVVSPKEAIDDHAGESETSV-HYHPELVNLAEAGDG----------------------- |
4 | 4gh9A | 0.09 | 0.08 | 3.03 | 0.69 | MUSTER | | -LSLALLLFTHLPGNNT------PFHILAQVLSKIAYKSGKSGAFLDAFHQILSEENAQAALTRLSRTFDAF---------LGVVPPVIRVKNFQTVPRPCQKSLRAV--PPNPTIDKGWVCVYSSEQGETRALKI- |
5 | 4kboA | 0.10 | 0.07 | 2.44 | 0.53 | CNFpred | | ------------------LYSPSQIGAFVLMKMKETAENHTAKNAVITVPA-YFNDSQRQATKDAGQILNVLRVINEPT---------------------------AAALAYGLDKEDKVIAVYDLGGGTFDISILE |
6 | 1vt4I | 0.15 | 0.14 | 4.67 | 0.50 | HHsearch-2 | | NVSRLQPYLKLQAPAKNVLGSGKTWVALDVYKVQCKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELLKSKPYENCLLVLLNV--QNAKAWNA---FNLSCKILLTTR |
7 | 2bydA2 | 0.04 | 0.03 | 1.62 | 0.70 | Neff-PPAS | | ----------SFPGRGSIPEFFHIMKRKFTNKEWETIRSFKD-------------EWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVALRK |
8 | 3gv2A1 | 0.15 | 0.05 | 1.72 | 0.39 | HHsearch | | -----PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPE----V-------------IPMFSALSEGA-------------------------------------------------------------------- |
9 | 1h09A | 0.06 | 0.05 | 2.26 | 0.68 | SP3 | | QF-FLDNVPMQVKYLDDPSGDAQANTNACLRFMQMIADAGYKPIYYSY---KPFTHDNVD-YQQILAQFPNSLWIAGYGLNDGTANFEYFPSLDDEEDDKPKTAGTWKQDSKG------WWFRRNNGSFPY------ |
10 | 3bzbA | 0.14 | 0.14 | 4.74 | 0.53 | PROSPECTOR2 | | RVERYQSPAGAPQCSVQVQTTSGARA-LADTLCWIVAFLAGADQVVATDYPDPEILNSLESNIREHTAASPKVVPYRWGDSPDSLQRCTGLQKLLALPANDPTAVALVTFTHDLAFFRLIAEPWLSPLVHRWRLRWR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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