Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | KVLVIRAEEGKIVSSDILDGDFAKIAKDVTARALTEWNPEESDLTALRTKLELRYPKPLPPEIADKILELSLKYSLEGNDVIVNLPVLVVSFDNRWIDETTYLDKKIYVIALYLDDNAKKQLEEYAAEATKAPKSVEA |
1 | 5cw9A | 0.17 | 0.15 | 5.00 | 0.70 | SPARKS-K | | MEMDIRFRGD-------DPEAYYKALREMIRQARKF-AGTVTVTLIIRFRGD-------DLEALEKALKEMIRQTLDGNDLEIRITLELVKEAIRLAKEFNITVTVELVIRITVPEQVRKELAKEAERLAKEFNITVT |
2 | 3wqtA1 | 0.12 | 0.12 | 4.07 | 0.60 | FFAS-3D | | KTIVGEKFHNGINVIGIKNGIARQAIKDTIKKASIASGVDIKEVFLKLPDESNEIDFYEDTEINGSHIEKVLEGIREQETEVINVFPIRFIVDKENEVSDPKELIKVEAGVIAIQKSILINMIKCVEAC--------- |
3 | 1vkyB1 | 0.19 | 0.12 | 3.97 | 0.31 | HHpred | | RLMVLHRKTQRIEHRIF--REII------------EYL-EPGDLLVLNVSKVITAGLHFTPELIEKLKKKGVQF------AEVVLHVG-------IHEE-F----------YQVPKETVRKLRET-RER--------- |
4 | 6cnbR | 0.15 | 0.14 | 4.65 | 0.64 | MUSTER | | KTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFFKIQNIVGSCDVKFPIRLEGLAFHGTFSSYEPELFPGLIYRMPKIVLLIFV---------SGKIVLTGAKQREEIYQAFEAIYPVLSEFRKMSGS |
5 | 1ufrA | 0.14 | 0.12 | 3.94 | 0.68 | CNFpred | | ----------MRFKAELMNAEMRRALYRIAHEIVEANKGTEGLALVGIHT-----GIPLAHRIARFIAEFEGK----------EVPVGVLDITVRETRI-DLTGKAIVLVDDVLYGRTARAALDALIDLGRPRRIYLA |
6 | 5lw8A | 0.12 | 0.05 | 1.79 | 0.39 | HHsearch-2 | | LVSFTINADGSVTDIKVVKSNTTDILNHAALEAIKSLFPKPE----ETVHLKIPIAYSLKED---------------------------------------------------------------------------- |
7 | 5cw9A | 0.13 | 0.12 | 4.28 | 0.71 | Neff-PPAS | | MEMDIRFRGDDP-------EAYYKALREMIRQARKFAGTVTVTLIIRFRGDDLEALEKALKEMIRQARKFAVTYTLDGNDLEIRITGVPPQVILELVKENITVTVELVIRITGVPEQVRKELAKEAERLAKEFNITVT |
8 | 5lw8A | 0.10 | 0.04 | 1.59 | 0.40 | HHsearch | | GEVLVSNADGSVTDIKVVKSNTTDILNHAALEAIKSLFPKPE----ETVHLKIPIAYSLKED---------------------------------------------------------------------------- |
9 | 1e4gT | 0.12 | 0.12 | 4.13 | 0.65 | SP3 | | KGLVLGKRDQEALAFSSVKSRFKESVNTLLKELEEQLQKSLRSFEREDTVIERDFGEEITLDILSEQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDKASKIAIEYTSIVPLKVYEFYNFLQDTVKSPFQLKS |
10 | 5cw9A | 0.15 | 0.12 | 4.17 | 0.62 | PROSPECTOR2 | | MEMDIRFRGDTVTLIIRFRGDDLEALEKALKEMIRQARKFAGTVTYTLDGLEIRITGVPPQVILELVKEAIRLAKEFNITVTVE----------------------LVIRITGVPEQVRKELAKEAERLAKEFNITRL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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