Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | YDFINKIIELSWCDIRWGYEREIITLDIPINEAERRVLSGSYTDRELELSFVIPGQSDEVISLLKLLCSECEMDDESTAKQKWLFIVLRWLWENRHSFNDPLNEIAGIYADFSYPAEIEGFVNYMPPSDGYDPVIHTETENINRLMDNWRYYLERT |
1 | 5cwjA | 0.12 | 0.11 | 3.86 | 0.78 | SPARKS-K | | --DSEEEQERIRRILKEARKSG--TLRQAIEDVAQLAKKSQDSRVILRIAKESGSELRQAIRAVAEIAKEAQD---SEVLEEAIRVILRIAKESGSELRQAIRAVAEIAKEAQDPRVLEEAIRVIIAEESG------SEEARRQAERAEEEIRRRA |
2 | 5xi8A | 0.11 | 0.10 | 3.51 | 0.81 | FFAS-3D | | ------------AQYGRALQAEANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLNRYTFNNKDDSNGWDLLAQAEAALNNRDQEDQAISLSSASSQVKLG-SLQQARYDARIDQLRQLQER- |
3 | 3ky9B | 0.18 | 0.15 | 4.82 | 0.27 | HHpred | | ----------LAQALRDGVLPHAINLKNIRTFLSTCCEKFGKRSEAFDLF--DVQDFGKVIYTLSALSWTPIAMEEAEGDEDKRCCCLREIQQTEEKYTDTLGSIQQHFLK-----PLQRF---LKPQD-----IEIIFINIEDLLRVHTHFLKEM |
4 | 5cwjA | 0.11 | 0.10 | 3.72 | 0.77 | MUSTER | | -DSEEEQERI-RRILKEARKSGT-SLRQAIEDVAQLAKKSQDSEVLEEAIRVESGSEEALRQAIRAVAEIAKEAQDSEVLEEAIRVILRIAKESGSELRQAIRAVAEIAKEAQDPRVLEEAIRVI----RQIAEESGSEEARRQAERAEEEIRRRA |
5 | 4c9bB | 0.12 | 0.10 | 3.66 | 0.63 | CNFpred | | -----------ISIIIQELLQENIVRGLLSRSVLQAQSASIFTHVYAALVAIINSKFPQIGELILKRLILNF-NDKQLCLTASKFVAHLINQNVAH--EVLCLEMLTLLLERPTDDSVEVAIGFLKEC---LKLTQVSPRGINAIFERLRNILHES |
6 | 1vt4I3 | 0.11 | 0.09 | 3.23 | 0.69 | HHsearch-2 | | --------------------EYALHRSIVDHYNIPKTFDSD---DL---IPPYLDQ--YFYSHIHHLKNIEHPERMTLFRMV--FLDFRFLEQKIRSILNTLQQFYKPYICDNDPKYERAILDFLPKIEENLISKYTDLLRIALDEAIFEEAHKQV |
7 | 5cwjA | 0.11 | 0.11 | 3.90 | 0.71 | Neff-PPAS | | ---SEEEQERIRRILKEARKSGTESLRQAIEDVAQLAKKSQDSEVLEEAIRVISGSEEALRQAIRAVAEIAKEAQDSEVLEEAIRVILRIAKESEEALRQAIRAVAEIAKEAQDPRVLEEAIRVI-RQIAEESGSEEARRQAERAEEEIRRRAQ-- |
8 | 4l3iA1 | 0.10 | 0.03 | 1.18 | 0.51 | HHsearch | | --------------------------------------------------------------------------------------RRSEVLAESVCLQKALNHLREIWELIGIPEDQRLQ-R------------------TEVVKKHIKELLD-- |
9 | 3pjrA | 0.09 | 0.08 | 3.17 | 0.61 | SP3 | | LKFYDRKEIKDILAYLRVIANP--DDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGEL--EMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAE---------RTIEAQSRLENLDEFLSVTKHFENVS |
10 | 1tm9A | 0.10 | 0.08 | 3.11 | 0.60 | PROSPECTOR2 | | MEQNNI-----KEQLISFFNQACSTHQERLDFICSTRESDTFSSVDVPL------------EPIKNIIEITKDENQQIEITKIAVNNIKTLSSVGATGQYMASFFSEPAIIF-----CVIYFLYHFGFLKDNNKKQIIKKAYETIADNIADYLNEN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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