Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | MMLPKTLKPVVEDKYVESLEELADLIASADLRTGVVRITARSGDALLDAFIVVLNGKVVYIEVEEVRTGERWRGEEALEHLREILSAIEGGQSAVVDVFEASEDDIEMIFEYHGIRPKEIELEDVLPVPALEADIEFETEELEGAEKEEATEETGIGVEEIEEAYDEEPEAVESYDFTEEVEREPESLSREEILKKYGIKEPDESFVENILKEFTGVETDLRERISRVLRSYGITVFKVEGIVEVLLGNDTDEEEVVETIRDFMKDAGVDELEVRTY |
1 | 5xwpA1 | 0.13 | 0.12 | 4.10 | 0.62 | SPARKS-K | | KIYLNENVNSERNDIKKKLNKINSLKYSFENKANY---QKINENNIEK--VEGKSKRNIIYDYYR----ESAKRDAYVSNVKEAFDKLYK------------EEDIAKLVLEIENLTKL----EKYKIREFYHEIRKNDKENFAKIIYEEIQNVNNK--ELIEKVPDS-ELKKSQVFYKYYL-DKEELNESQLLKNYVYKR-SNDKIKRIFQNLKKIENKLLNKLDTYVRNCGKYYLQDGEIADFIARNRQNEAFLRNSLRNIL-ETENENDRGKTV |
2 | 5ijnF | 0.14 | 0.13 | 4.41 | 0.75 | FFAS-3D | | ----------IRSQQQQLVESLHKVLGGQTLTVNVEGTKTLPDDQT----------EVVIYVVERSPNGTSRRATTLYAHFEQANIKTQLQQLGVTLSMTRTPAQIKQLLQNPPAGVDPIIWEQAKVDPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRDIISEDISELQKNQTTSVAKIAQYKRKLMDLSHRTAIQADEEQLLDTIQGELNA-PTQFKGRLNELMSQYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLVE------ |
3 | 4fhcA | 0.09 | 0.06 | 2.51 | 0.30 | HHpred | | --FTQGI-KIRTTSHNQVRTELARYRNA--K-STLVVGVRRTLKPSAEYAIPLATGCMGHCHYCYLQGSKVVNLDDIFAQAQ---KYINERAPEITRFECSDIHSLKKAIEFIGATDGRLRFVT-------------KYE---HVDHLLDARHNGK--------------TRFRFSIN----------S-RYVINHFEPGTSSFDGRLAAARK---------------VAGAGYKLGF---VVAPIYRHEGWERGYFELFQ-ELARQLLSDLTFELI |
4 | 4fgvA | 0.11 | 0.10 | 3.69 | 0.62 | MUSTER | | QTGGPGQPHTYDEQLIKMFTEVLTTISNIPLQMDLKATYPNSNSRDQEFIQNL--ALFLTSFFTMHLP-ENLPNRDFLTHGHFYLIRISQIDD---EIFKICLDYWLKLVQELYEEMQSLPLNDMSSMGLGMMSGGGAPNPALLEHYPLRKHKYKEVLSNLRVVMIEKMVRPEEVLIVENDEGEREFVKDTDSVQLYKT----RECLVYLTHLVVDMEQIMTEKLARQVDGSEWSWHNCNVLCWAIISMAMNEETEKRFLVTVIKDL-LGLTEMKRG |
5 | 3u1kA | 0.12 | 0.08 | 2.66 | 0.60 | CNFpred | | ----------------AINGASVALSLSDI-PVGAVRIGIIDSSTLNLVVAGAPKSQIVMLEASAEN----ILQQDFCHAIKVGVKYTQQ-----------IIQGIQQLVKETGVTKRTPQKLFT-------------------------------PSPEIVKYTHK--------------------LAMERLYAVFTDYEHDKVSRDEAVNKIR---LDTEEQLKEKFPE------ADPYEIIESF-----NVVAKEVFRSIVLNE---------- |
6 | 2pffB | 0.13 | 0.13 | 4.39 | 0.44 | HHsearch-2 | | KILPEPTEGFAADTPAELVGKFLGYVSSLVEPSKVGQFLLCLT-EFENCYLEGNDIHALAAKLLQENQLVAIFGDDYFE---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDATQGLNILEWLENPSNTPDKDY-LLSIPISAHYVVTAKLLFTPGELRSYLTGHSQGLVTAAIAETDSWESFFVSRKAIYEAYPNTSLPPSILEDSLENNENLVQDYVNKTNSHLRKSRIPFSERSNFLPVA-SPFHSHLLVDLINKDLVKNNVSKDIQIPVY |
7 | 2tmaA | 0.08 | 0.08 | 3.03 | 1.09 | Neff-PPAS | | ----KLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI |
8 | 2kpoA | 0.17 | 0.06 | 1.90 | 0.61 | HHsearch | | -------------------------------------------------------------------------------------------MLLYVLIISN---------------------------------------------DKKLIE-------E-----------------------------ARKMAEKANLEVKTEDELKKYLEEFRVSNDEELDKAKELAQKMEIDVRT---------RKVTSPDEAKRWIKEFSEEGGSLEHHHHH- |
9 | 5cwmA | 0.20 | 0.16 | 5.19 | 0.54 | SP3 | | -------------DPEDELKRVEKLVKEAEEL---LRQAKEKGS-------------------EEDLEKALRTAEEAAREAKKVLEQAEKEGDVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLEL--AEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGSEEAKER------------AERVREEARELQERV--KELRER-- |
10 | 6defA | 0.07 | 0.06 | 2.66 | 0.84 | PROSPECTOR2 | | TLAQPGGISD--PNLIKLVNKLQDVFTTVGVNNPVLQLINRQSSDERLADSTDKAANLEWGEFLHLPGQKFYDFNKIRDEINRETEAKVGRNAINLRIYSPHSDGLKLAREVDPEGDEGTDVVDILAGRIIPLRLGYVPVVNRGQRDIDNKKPITAALEAEKAFFENHK------AYRNKSAYCGTPYLARKLNLIL------MMHIKQTLPDIKQRISSSLQKYQQELEALGPS------------AESDYTVRRRKECQQMVESLQRAAEIVSQV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|