Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | RDPYRKRIQILVNLLGEIIKKQNKLTRRDVADLLRKTYEKNKIKPLKGKATPPDLYDKELASLYVIGKYGLGIDNEYPELFDKIFYLEKGFEEAIDKILAGQYSEARAILKKTSSAAVIDSNTVARMLRTAFTRLLLGFLDEEAFAKILKKTLEAIPEEERTVRNYVRFYIAYKVAEGIYRGEIRNKIFKEAFKRAMALRLGFPRTIPSDEYVAIISKEVFNIPDKILSRIL |
1 | 5cwmA | 0.11 | 0.10 | 3.57 | 0.70 | SPARKS-K | | LKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKLEQAEG---DPEVALRAVELVVRVAELLLRIESGSEEALERALRVAEEAARLAKRVLELAEKQGD--------------------PEVALRAVELVVRVAELLLRIAKESGSE-EALERALRVAEEAARLAKRVLELAEKQ-GDPEVARRAVELVKRVAELLERIAGSEEAKERAERVREEAQERVKELR |
2 | 6bqtA | 0.14 | 0.12 | 4.14 | 1.03 | FFAS-3D | | ---QAERYDDMATCMKAVTEQGAELSNEE-RNLLSVAYKN--------------VVGGRRSAWRVISSI-EQKTDTSDKKLQLIKDYREKVESELRSIC----TTVLELLDKYLIANATNPESKVFYLKMKYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSY--KDSTLIMQLLRDNLTL-- |
3 | 4wz9A2 | 0.10 | 0.09 | 3.19 | 0.26 | HHpred | | -------WTAANVALTYRLRGT--AEYHNFDALIEDIYSLLTIDAV---SPDDTLLHKYLVQTISACSMGYTDPAVHPDIASVTYCYESEFQYLYRKMMNSKNLAERT--MLIDSLGSNNKEFLKAFLTTALGS---INYRADERRRVVQAIYSGGRTGVDALIEFLEFVSTSTLNSALSASRTNNVEEMNKLNALITAL-GSR---VNSQTATTAQANL------------ |
4 | 5cwmA | 0.14 | 0.12 | 4.28 | 0.79 | MUSTER | | PEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEA---------------AREAKKVLEQAE-----KEGDPEVALRAVELVVRVAELLLRIAKESEEALERALRVAEEAARLAKRVLELAEKQGDPEVAL--RAVELVVRVAELLLRIAKESEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLSGSEEAKERAERVREEARELQERVK |
5 | 4c0oA | 0.10 | 0.09 | 3.18 | 0.75 | CNFpred | | DNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQ--------------HSCFLYLGSILVDEYGMEEGCRQGLLDMLQA--LCIPTFQLLEQQGLQNHPDTV-----------DDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQ--------LGQQLVSQLLHTCCFLPPYTLPDVA |
6 | 1vt4I3 | 0.17 | 0.10 | 3.39 | 0.72 | HHsearch-2 | | ----------------------------------------------------EYALHRSIVDHYNIPKT-FDSDDLIPPYLDQYFYSHIG-----HHLKN--I----------------EHPE-------RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSITLQQLKFYKPYICD--------NDP-KYERLVNAIFLPKIEE-NLICSKYLLRIALEDEAIFEEAHKQVQ |
7 | 5cwmA | 0.11 | 0.10 | 3.70 | 0.79 | Neff-PPAS | | -EDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQDPEVALRAVELVVRVAELLLRIESGSEEALERALRVAEEAARLAKRVLELAEKQGD---------------------PEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIASGSEEAKERAERVREEARELQERVK |
8 | 3o59X1 | 0.16 | 0.05 | 1.58 | 0.47 | HHsearch | | -------------------------------------------------------------------------------------------------------------------------SDAGR------VESLVGP---PGVAERIRELVK----------EYGKEIAALKIVDEIIDGKFGDLSKEKYAEQAVRTALAI--LTEG-------------VV-------- |
9 | 5cwmA | 0.15 | 0.14 | 4.63 | 0.60 | SP3 | | PEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEE--------------AAREAKKVLEQAEKEG------DPEVALRAVELVVRVAELLLRIAKGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVAL--RAVELVVRVAELLLRIAKESEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLSGSEEAKERAERVREEARELQERVK |
10 | 5cwpA | 0.14 | 0.13 | 4.38 | 0.78 | PROSPECTOR2 | | MSSDEEEARELIERAKEAAERAQEAAERTGDPRVRELARE----------------LKRLAQEAAEEVKRDPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARAEEVQRNPSSSDVNEALKLIVEAI-------EAAVRALEAAERTDPEVRELARELVR--LAVEAAEEVQRNPSSEEVNEKAIQEAVESLREAEESGDPEKRVREAVERAEEVQRDPSGWLE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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