>PF09913 (395 residues) LFFGVLFAVINAPFQDPDEPIHFYRAYQISTGQMFEQKNNSGIGGYLPQNLIKTSENLSE DIKAKSNKKQDINKIKYYLNLPLNKNKVAFNDFRSATIYSDIVYIPQSIGINLAKIFRAS ALYMMYFGRIANLICWTIIVFFSVKLIPFKKNLMAFLALTPMNLYQAASLSADAMTNSMA FLSIALVLRYAFGEEEAKLTKRQIVTMIIAFTLLAFSKRIYFVMCILFFIIPMKKFNSKK DYIGTFVIMLGACLMSLVTVSVISKILAIKVSAGSYTPGQMEFVLSHPITYIHILLRTFH FKMSFYAISFIGVFGWLDTRLPLNLYLFYGVALVLIALFEHTLIEKNKDRIIMFIVFIIN VGLIMSALYVSWTPKAANIIEGIQGRYFIPIIPLL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LFFGVLFAVINAPFQDPDEPIHFYRAYQISTGQMFEQKNNSGIGGYLPQNLIKTSENLSEDIKAKSNKKQDINKIKYYLNLPLNKNKVAFNDFRSATIYSDIVYIPQSIGINLAKIFRASALYMMYFGRIANLICWTIIVFFSVKLIPFKKNLMAFLALTPMNLYQAASLSADAMTNSMAFLSIALVLRYAFGEEEAKLTKRQIVTMIIAFTLLAFSKRIYFVMCILFFIIPMKKFNSKKDYIGTFVIMLGACLMSLVTVSVISKILAIKVSAGSYTPGQMEFVLSHPITYIHILLRTFHFKMSFYAISFIGVFGWLDTRLPLNLYLFYGVALVLIALFEHTLIEKNKDRIIMFIVFIINVGLIMSALYVSWTPKAANIIEGIQGRYFIPIIPLL | |||||||||||||||||||
1 | 5ezmA1 | 0.08 | 0.06 | 2.48 | 1.61 | SPARKS-K | ----------------------------------------SAATGWVVLFVAVALVVWFVSLDMRHLVGPDEGRYAEISREMFASGDTIRYNALKYFEKPPFHMWVTVVGYELFG----LGEWQARLAVALSGLLGIGVSMMAARRWFGAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDASVAARRGWMVACWAAMGVAILTKLVGIALPGLVLVVYTLVTRDWWRRLHLALGVVVMLVITVPWFYLVSVRFFFIHGSVFYFLPLVIGGFLPWAGIFPKLWTAMR-------------------ARFRPALMAGIWAIAIFVFFSISRSKLP-----GYIVPVIPALGILAGVALDRL---------------------- | |||||||||||||
2 | 5ezmA | 0.11 | 0.09 | 3.11 | 1.60 | FFAS-3D | VAVALVVWFVRHLVG-PDEGRYAEISREMFSGDWVTIR----------------------------------------------------YNALKYFEKPPFHMWVTVVGYEL---FGLGE----WQARLAVALSGLLGIGVSMMAARRAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDASVAARRGWMVACWAAMGVAILTKVGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRNPRSGSVFYFLPLVIGGFLPWAGIFPKLWTAMALMAGIWAIAIFVFFSISRSKLPGYIVPVIPALGILAGVALDRLSPRSWGKQLIGMAIVAACGLLASPVVAT------------------------ | |||||||||||||
3 | 5ezmA1 | 0.12 | 0.09 | 3.12 | 0.81 | HHpred | LFVAVAVSLDMRHLVGPDEGRYAEISREMFASG-------D----WV-----------------TIRY----------------NAL----K---YFEKPPFHMWVTVVGYEL---FGLG----EWQARLAVALSGLLGIGVSMMAARRAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDASVAARRGWMVACWAAMGVAILTKGLVGIALPGLVLVVYVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRNEFIHEHWQR-------RSGS--------------VFYFLPLIGGFLPWAG-------IF---PKLWT--AMRAR---FR-PALM-AGIWAIAIFVFF-----SIS-------RSKLPGYIVPVIPAL | |||||||||||||
4 | 3wajA1 | 0.09 | 0.08 | 2.89 | 1.34 | MUSTER | ALISVKLRILNPRLGGNDPWYYYRLIENTIHN-------FPHRIWFDP-------------FTYYP--------------------------YGSYTHFGPFLVYLGSIAGIIFSATSGLRAVLAFIPAIGGVLAILPVYLLTREVFDKRAAVIAAFLIAPGQFLQRSFNDHHIWEAFWQVSALGTFLLAYNRWKGHDLTMAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSIAAAFYQIEKWNDVGFFERVKGMPLAVIVLTANAVLHFGALFFFGMAGILYSAYRFLKRRSFPEMALLIWAIAMFIALWGQ-----------------RFAYYFAAVS | |||||||||||||
5 | 5ezmA | 0.09 | 0.07 | 2.67 | 1.43 | CNFpred | VAVALVVWFVSRHLVGPDEGRYAEISREMFAS-----------GDWV---TIRYNALKYF-------------------------------------EKPPFHMWVTVVGYELF---GLGEWQARLAVALSGLLGIGVSMMAARRWFRAAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDASVAARRGWMVACWAAMGVAILTKGGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRN---------PEFPNFFFIHE-YFLPLVIGGFLAGIFPKLWTAMRA------RFRPALMAGIWAIAIFVFFSISRSKL---PGYIVPVIPALGILAGVALDRLS------------------------ | |||||||||||||
6 | 5ezmA | 0.11 | 0.09 | 3.23 | 1.89 | HHsearch-2 | VAVALVVWFDMRHLVGPDEGRYAEISREMFASGDWV----------T------------------I----------------RYNA-L---K---YFEKPPFHMWVTVVGYELF---GLG----EWQARLAVALSGLLGIGVSMMAARRGAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDASVAARRGWMVACWAAMGVAILTKGLVGIALPGLVYTLVTRDWGLWRRLHLALG-VVVMLVITVPWFYLVSVRNEFHQRRSGSFLPLVIGGFLPWAGIFPLWTAMRAMAGIWAIAIFVFFSISRSKLPGYIVPVIPALGILAGVALDRL-SPRSWGKQLIGMAIVAACGLL---ASPVVALNANHNSFYYAVWVAVAFVML | |||||||||||||
7 | 5ezmA1 | 0.08 | 0.06 | 2.48 | 1.97 | Neff-PPAS | VAVALVVWFVSRHLVGPDEGRYAEISREMFASGDWV---------------------------------------------------TIRYNALKYFEKPPFHMWVTVVGYELFG---LGEWQARLAVALSGLLGIGVSMMAARRWFGAAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDASVAARRGWMVACWAAMGVAILTKLVGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRNP--------EFPNFFFIHRSGSVFYFLPLVIGGFLPWAGIFPKLWTAMRARFRPALMAGIWAIAIFVFFSISRSKL---PGYIVPVIPALGILAGVALDRL------------------------- | |||||||||||||
8 | 5ezmA1 | 0.10 | 0.07 | 2.71 | 1.86 | HHsearch | VAVALVVSLDMRHLVGPDEGRYAEISREMFASGDWV----------------------------TIR----------------YNA-L---K---YFEKPPFHMWVTVVGYELF---GLG----EWQARLAVALSGLLGIGVSMMAARRGAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDASVAARRGWMVACWAAMGVAILTKGLVGIALPGLVLYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRNEFIHEHWQR-------RSGSV--------------FYFLPLVGGFL-------PWAG------IFPKLWTAM-R-ARFRPALMAGIW--AIAIFVF-----FSISR-------SKLPGYIVPVIPA- | |||||||||||||
9 | 3wajA1 | 0.12 | 0.10 | 3.61 | 1.71 | PROSPECTOR2 | SVLVIAALISVVRLGGNDPWYYYRLIENTIHNF----------------------------------------------PHRIWFDPFTYYPYGSYTHFGPFLVYLGSIAGIIFS--ATSGESLRAVLAFIPAIGGILPVYLLTREVFDKRAAVIAAFLIPGQFLQRSILGFHIWEAFWQVSALGTFLLAYNRWKGHDLTMAYPVIAGITIGLYVLSWGAGFIIAILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQGMPLAVIVLTALIMGLFFVLTNAVLHFGALFFFGMAGILYSAYRFLKRRSFPEMALLIWAIAMVSAVYSALALSVYLQLYPTPQSNKEPFSYPFETYA | |||||||||||||
10 | 5ezmA1 | 0.10 | 0.07 | 2.59 | 0.89 | SAM | -----FVSLDMRHLVGPDEGRYAEISREMFAS------------------------------------------------TIRYNA-------LKYFEKPPFHMWVTVVGYELF--------LGEWQARLAVALSGLLGIGVSMMAARAAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDASVAARRGWMVACWAAMGVAILTKGLVGIALPGLVLVVYTLVTRGLWRRLHLALGVVVMLVITVPWFYLVSVRNEFR-----------------------------------------GSVFYFLPLVIGGFLPWAGIFPKLWT--------ARFRPALMAGIWAIAIFVFFSIS-----------RSKLPGYIVPVIPAL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |