Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | LYLLYIISFVVGSIAGLVLSYKKYSAPFVAQNVDIVALVLAIVGWVLALNSQLITAVPSYISITVGIFLIALVLGMRPGYGRYETFTGFVVAGLIWIL |
1 | 5xj5A1 | 0.16 | 0.15 | 5.07 | 1.12 | SPARKS-K | | ALFLVIFAYLLGSITFGEVIAKLKGVDLLGKKYGVLVFFLDFLKGFIPALIAVKSFGSWVLTFTGLASVLGHMFGFKGGKG-VATALGVVFAV----- |
2 | 5wudA2 | 0.13 | 0.12 | 4.27 | 1.08 | MUSTER | | LLYADAIGLGAFASSGASLAYSVSNNVILV----VIVGAITAVGGGVIRDILSVPLIEFYATTAVIGSFVYFIASDLSVPEDVALIVSFLITLILRIL |
3 | 5wudA2 | 0.19 | 0.18 | 5.93 | 1.09 | SPARKS-K | | LLYADAIGLGAFASSGASLAYSVSNNV---ILVVIVGAITAVGGGVIRDILSLILTREFYATTAVIGSFVYFIASDLSVPEDVALIVSFLITLILRIL |
4 | 5gupV | 0.17 | 0.16 | 5.39 | 0.75 | FFAS-3D | | --ASTSIGGATGLIVSAYSIALKPPASFTGRYTFTSAAIGAIFGLTSCISAQVREKPDDPLNYFIGGCAGGLTLGARTRSYGIGAAACAYMGLTAALV |
5 | 3j1zP1 | 0.14 | 0.10 | 3.51 | 0.35 | HHpred | | ------------------------TQTSQYDFWVKLASRASVATALTLITIKLLSMLSFADTLASIINFIAIRYAIVPGHGKAEPLAALAQSAFIMGS |
6 | 5ogeA2 | 0.06 | 0.05 | 2.29 | 0.97 | MUSTER | | YTIFKNLTIILIAYGEVLF----FGGSV--TSMELSSFLLMVLSSVVATWGSTTYSMVGALNKLPIALSGLIFFDAPRN---FLSILSIFIGFLSGII |
7 | 3rkoB | 0.16 | 0.15 | 5.11 | 0.88 | CNFpred | | SALIHAATMVTAGVYLIARTHGLFLTPEVLHLVGIVGAVTLLLAGFAALVQDIKRVLAYSTMSQIGYMFLALGVQAW--AAIFHLMTHAFFKALLFLA |
8 | 3j1zP | 0.17 | 0.13 | 4.35 | 0.70 | HHsearch-2 | | ASRASVATALTLITIKLLAWLYSGSASMLASLTDS-----------------------FADTLASIINFIAIRYAIVPGHGKAEPLAALAQSAFIMGS |
9 | 5wudA2 | 0.19 | 0.18 | 5.93 | 0.86 | Neff-PPAS | | LLYADAIGLGAFASSGASLAYSVSNN---VILVVIVGAITAVGGGVIRDIVPLILTREFYATTAVIGSFVYFIASDLSVPEDVALIVSFLITLILRIL |
10 | 3j1zP1 | 0.14 | 0.10 | 3.51 | 0.58 | HHsearch | | -----------------------MTQTSQYDFWVKLASRASVATALTLITIKLLSMLSFADTLASIINFIAIRYAIVPGHGKAEPLAALAQSAFIMG- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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