>PF09848 (363 residues) MFVVQGDAGTGKSVILNSLFNDVQKLANNNPDTTDILKGTRNYLIVNHPEMLKLYHRMST NYTYINKASLERPTSLINNLQKRKEMADVVIIDEAHLLATSKDAFKRFYGENHLKELMEL AKVLVLVYDEKQALRMGCYWDENTENGANLQTFYDEIPESKRGWYNLKQQFRVAAPPDVL DWINDISVEGKIPKYPKSAKGSLEPKFDFQIWDDCNEMYMKLKEKNETFGQCRMLSTYDF PYRLDGKTYYVTCGDFKLRWDMYAPKALLPWSEREDTIDEVGSVYTVQGFDLNYAGVILG RSVGYDKANDCIKLRPELYDDHAGFTKKKNISDADTVKQKIIMNSINVLLTRGTKGLYVY AWD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MFVVQGDAGTGKSVILNSLFNDVQKLANNNPDTTDILKGTRNYLIVNHPEMLKLYHRMSTNYTYINKASLERPTSLINNLQKRKEMADVVIIDEAHLLATSKDAFKRFYGENHLKELMELAKVLVLVYDEKQALRMGCYWDENTENGANLQTFYDEIPESKRGWYNLKQQFRVAAPPDVLDWINDISVEGKIPKYPKSAKGSLEPKFDFQIWDDCNEMYMKLKEKNETFGQCRMLSTYDFPYRLDGKTYYVTCGDFKLRWDMYAPKALLPWSEREDTIDEVGSVYTVQGFDLNYAGVILGRSVGYDKANDCIKLRPELYDDHAGFTKKKNISDADTVKQKIIMNSINVLLTRGTKGLYVYAWD | |||||||||||||||||||
1 | 3gp8A | 0.14 | 0.11 | 3.65 | 1.09 | SPARKS-K | LVVLTGGPGTGKSTTTKAVADLAESLGLE------VGLCAPT------GKAARRLGEVTG-------RTASTVHRLLRHNHLEPAPYDLLIVDEVSMMG-----------DALMLSLLAAVPRVLLVGDTDQLPPV--------DAGLPLLALAQAA-----PTIKLTQVYRQAAKNPIIQAAHGLL-HGEAPAWG-------DKRLNLTEIEPGARRVALMVRELGGPGAVQVLTPM-----RKGPLGGVRIAEGEATVVQTKNIFNGTLGMTGAQLGYALTVHRAQGSEWGTVLGVLH----------------------------------EAHMPMLSRNLVYTALTRARDRFFSAGSA | |||||||||||||
2 | 3vkwA | 0.16 | 0.11 | 3.75 | 1.23 | FFAS-3D | VVLVDGVPGCGKTKEILSRV-----------------NFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRSFLMNYGKGARCQFKRLFIDEGLMLHT-----------GCVNFLVEMSLCAYVYGDTQQIPYINRVTGFPYP--------AHFAKLEVDEVETRRTTLRC--PADVTHFLNQRYEGH------VMCTSSEKKSVSQEMVSGAASINP---------------------VSKPLKGKILTFTQSDKE------------ALLSRGYADVHTVHEVQGETYADVSLVRLTP-----------------TPVSIIARDS--------------PHVLVSLSRHTKSLKYYTVD | |||||||||||||
3 | 3gp8A | 0.14 | 0.11 | 3.67 | 1.42 | HHpred | LVVLTGGPGTGKSTTTKAVADLAESLGL------EVGLCAPT------GKAARRLGEVTGRT-------ASTVHRLLGYNHLEPAPYDLLIVDEVSMMGDA-----------LMLSLLAAVARVLLVGDTDQLPPVD-AGL--P-----LLALAQA-----APTIKLTQVYRQAAKNPIIQAAHGLLHGEAP---AWGD-----KRLNLTEPDGGARRVALMVRELGGPGAVQVLTPMRKPLGMDPGEGEARPGDTVQTKNIFNGTGARLTVGFNLQLGYALTVHRAQGSEWGTVLGVLHEAH---------------M---PM------L--S--------RNLVYTALTRARDRFFSAGSA | |||||||||||||
4 | 3k70D | 0.14 | 0.12 | 4.13 | 1.15 | MUSTER | ISVISGGPGTGKTTTVAKLLAALIQMADGER--CRIRLAAPTGKAA--ARLTESLGKALRQLPLQKKRIPEDASTLLRHHAGNPLHLDVLVVDEASMI-----------DLPMMSRLIDAHARVIFLGDRDQLASVEAGAVLGDICAYATAERARQLSSLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK--TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLAEPDLIIQAFNEYQLLCALREGPFGVAGMQQKRPSRLPEHETTWAMTVHKSQGSEFDHAALILPS------------------------QRTPVVT----------RELVYTAVTRARRRLSLYADE | |||||||||||||
5 | 3e1sA | 0.14 | 0.11 | 3.69 | 1.68 | CNFpred | LVVLTGGPGTGKSTTTKAVADLAESLGL------------EVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGD--------ALMLSLLAAVPPGARVLLVGDTDQLPPVD--------AGLPLLALAQA-----APTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTE-GAVQVLTPMGMDHLNYHLQALFNP-PGDTVVQTK-GMVLKEGARLTVDFDGNVVELTGA--------ELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPM----------------------------------LSRNLVYTALTRARDRFFSAGSA | |||||||||||||
6 | 3k70D | 0.14 | 0.12 | 3.92 | 1.00 | HHsearch-2 | ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKA--------AARLTESLGKAPTLHRLLGAQPQRLRH-HAGNPLHLDVLVVDEASMIDLP--------MMSRLIDALPDHARVIFLGDRDQLASVE-AGAV-------LGDICAYANSLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT-AVKTV-FQQDFTDIEKRLLQSGEDMLEEALAGYGAFNEYQLLCALRE-----G-PFGV------AGLNERIEQQKRPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP----------------------------------VVTRELVYTAVTRARRRLSLYADE | |||||||||||||
7 | 5eanA2 | 0.16 | 0.13 | 4.51 | 1.51 | Neff-PPAS | YTLIVGMPGTGKTTTICALVRILSACGFSFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNTCMGINHPIFSRKTFDFCIVDEASQIS-----------QPVCLGPLFFSRRFVLVGDHQQLPPL--VVNREARALGMSESLFKRLERNESAVVQLTVQYRM--NRKIMSLSNKLTYAGKLECGSDRVANAVLA------LPNLKDARLSLQLYADYSNPVCFLNTDKVPAPEQVENGGVSNVTIKAGCSPSDRIISDLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRS----------------------------NEDGTLGELLKDWRRLNVALTRAKHKLILLGSV | |||||||||||||
8 | 3k70D | 0.15 | 0.12 | 3.92 | 1.27 | HHsearch | ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKA--------AARLTESLGKLPTLHRLLGAQPQRLRH-HAGNPLHLDVLVVDEASMIDLP--------MMSRLIDALPDHARVIFLGDRDQLASVE-AGAV-------LGDICAYANSLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT-AVKT-VFQQDFTDIEKRLLQSGEAMLEEALAGYGAFNEYQLLCALRE-----G-PFGV------AGLNERIEQQKRPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP----------------------------------VVTRELVYTAVTRARRRLSLYAD- | |||||||||||||
9 | 5o6bA2 | 0.15 | 0.10 | 3.42 | 1.49 | PROSPECTOR2 | NIFYTGSAGTGKSILLREMIKVLKGIYGREN----VAVTASTGLAACNIGGITIHSFAGIGLGKGDADKLYKKVRRSRKHLRRWENIGALVVDEISMLDAE--------LLDKLDFIARKGIQLIFCGDFFQ-LPPVSKPTKFAFESKAWKEG-------VKMTIMLQKVFRQRGDVKFIDMLNRMRLGNID-----------------------DETEREFKKLSRPLPDDEIIPAELYS----------------------------------------LSIHKSQGQTLPKVKVDLRRVFE--------------------------------------KGQAYVALSRAVSREGLQVLN | |||||||||||||
10 | 3k70D | 0.15 | 0.12 | 3.99 | 2.16 | SAM | -SVISGGPGTGKTTTVAKLLAALIQERCR----IRLAAPTGKA--------AARLTESLGDASTLHRLLGAQPQRLRH-HAGNPLHLDVLVVDEASMIDLP--------MMSRLIDALPDHARVIFLGDRDQLASVE-AGAV-------LGDICAYA----NSLCLLQKSYRF--GSGIGQLAAAINRGDKTAVKTVFD----FTDIEKRLLQSGEDYIAMLEEALAGYGRYDLLQARAEPDLIAFNEYQLLCALREGPFGVAGLNQKRPSRLPEHETTWAMTVHKSQGSEFDHAALILP----------------------------------SQRTPVVTRELVYTAVTRARRRLSLYADE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |