Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VQSLAGSIYQEFEGMIARYDEDVVKTLMPLLVNVLECLDAAYQQNQEHDVELELLREDNEQLVTQYEREKGARKTAEQKLLECEDIAEGERKELSSRLEALESIVRMLEIKHKNSVEHAIRLEERETELKKEYAKLHERYTELFKTHVEYMERTK |
1 | 4uosA | 0.12 | 0.12 | 4.14 | 1.09 | SPARKS-K | | VKKMLEKMIEEIKKMLEKAIKEMLEKMIKEIKKMLEAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLESEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELG |
2 | 3u0cA | 0.11 | 0.10 | 3.53 | 1.40 | FFAS-3D | | ----SSQLTLLIGNLIQILGEKSLTALT-------NKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSEEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDS-- |
3 | 3u0cA | 0.15 | 0.14 | 4.81 | 1.15 | MUSTER | | --NASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSEL-DPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDSF- |
4 | 4kp3C | 0.22 | 0.09 | 2.85 | 1.76 | HHsearch-2 | | VYDISYVVGRELM----ALGSDPVTRLQFKIVRVMEMLETLVNEGSL---AVEELRMERDNLKQEVEGLR------------------------------------------------------------------------------------- |
5 | 3u0cA | 0.15 | 0.14 | 4.81 | 1.16 | Neff-PPAS | | --NASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESP-EKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDSF- |
6 | 4kp3C | 0.22 | 0.09 | 2.85 | 2.84 | HHsearch | | VYDISYVVGRELM----ALGSDPVTRLQFKIVRVMEMLETLVNEGSL---AVEELRMERDNLKQEVEGLR------------------------------------------------------------------------------------- |
7 | 2tmaA1 | 0.16 | 0.14 | 4.74 | 1.38 | FFAS-3D | | ------AIKKKMQML-----KLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAETDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR-AQKDEEKMEIQEI-- |
8 | 3na7A1 | 0.16 | 0.13 | 4.27 | 1.11 | MUSTER | | -------------------LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE--RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL------------ |
9 | 4mh6A | 0.06 | 0.06 | 2.55 | 1.06 | Neff-PPAS | | -TENLYFQSNAIERLLEIK-KIRADRADKAVQRQEYRVANVAAELQKAERSVADYHVWRQEEEERRFAKAKQQTVLLKELETLRQEIALLREREAELKQRVAEVKVTLEQERTLLKQKQQEALQAHKTKEKFVQLQQQEIAEQSRQQQYQEELEQ |
10 | 5xg2A | 0.13 | 0.13 | 4.46 | 1.38 | FFAS-3D | | --EARKSLYEGEARIKRAEEKAEILTGEARLPGLRERAENLRRLVEEKRAEISELERRLSSITSQSFELRIKLSDLEKELELAREKVLAEERAVREEIEVAKRRINELDTLIERERGELAKLRGRIERLERKRDKLKKAEARELTEKIRAVEK-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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