>PF09710 (413 residues) DKLKLIFILMLAVLLFSCTKEIKEPAEERNSVVKNEVMEKKPLLILEHTIPSKEEDDEDI DFTEEEPPIVLTDENTPETELIKLLESKKRHAWSLHKIQLEIDMYDVHGNSYEEFEKSGI DYLNRQKNTEIVKVDSDNKNIYCKQTLNLPSGKELIYDAVYTFYPYPKNFAYTNYELREK PVIADRQVQESKRVHGKITEAEKDINKNKNIKIFERYINKYTKEYRHKTGDKLYKVLDYV KGNFSNSGKDEYIVLFTAPFTKSELEDGIFILEYSYIKYVECFIMENDKVIKMYKLPGHW GHVVPRDKTKIDLGEQFSFGWIADFNQNGINEIFVHRKEVFGSSFFSIEFIDNRFVEIPI TNRGDILKSVDWEQSKIVVETNPFRSLVLDSKDTRPKYFAEYQWCEKEHCYVL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DKLKLIFILMLAVLLFSCTKEIKEPAEERNSVVKNEVMEKKPLLILEHTIPSKEEDDEDIDFTEEEPPIVLTDENTPETELIKLLESKKRHAWSLHKIQLEIDMYDVHGNSYEEFEKSGIDYLNRQKNTEIVKVDSDNKNIYCKQTLNLPSGKELIYDAVYTFYPYPKNFAYTNYELREKPVIADRQVQESKRVHGKITEAEKDINKNKNIKIFERYINKYTKEYRHKTGDKLYKVLDYVKGNFSNSGKDEYIVLFTAPFTKSELEDGIFILEYSYIKYVECFIMENDKVIKMYKLPGHWGHVVPRDKTKIDLGEQFSFGWIADFNQNGINEIFVHRKEVFGSSFFSIEFIDNRFVEIPITNRGDILKSVDWEQSKIVVETNPFRSLVLDSKDTRPKYFAEYQWCEKEHCYVL | |||||||||||||||||||
1 | 3greA | 0.09 | 0.04 | 1.68 | 1.07 | CNFpred | -----------------------------------------------------------------------------------------------------IKIWNLKEIIVGEVYSSSLTYDCS-STVTQITMIPNFDAFAVSSK----DGQIIVLKVNHYQQE--SEVKFLNCECIRKINLKNFG------KNEYAVRMRAFVN------------------------EEKSLLVALTN--------LSRVIIFDIR----TLERLQIIENSPRHGAVSSICIDECCVLILGTTR-GIIDIWDINVLIRSWS-DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN---------------------------------------------------- | |||||||||||||
2 | 3tnfB | 0.09 | 0.08 | 3.12 | 1.17 | Neff-PPAS | ------------------DEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEK---HKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMS----------TDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEEVTSLNDA---HYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMT---------VKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKI | |||||||||||||
3 | 5xjcW | 0.09 | 0.09 | 3.31 | 1.21 | SP3 | EQQRRTFATYGYALDPSLDNHQVSAEAEKNQGLTVFETGQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGTKGVSAVRL--FPLSGHLLLSCSKIKLWEVYGERRCLRTFIGHKAVRDICTAGTYDRYLKLWD---TETGQCISRFTNRKVPYCVKFN----PDEDKQNLFVAGMSDKKDIRSGEIVQEYDLGAVNTIVFVDENRDKSLRVWEWDIPVDFKYIAEPSMHSM-------PAVTLSPNGKNQILIFGAQNRFRLNKKKIFVAGYACQVDFSPDMSYVISGDGNGK-LNIWDWKTTKLYSRFKAHDK-VCIGAVWHPHETSKVI | |||||||||||||
4 | 3s6pA | 0.09 | 0.09 | 3.47 | 1.18 | PROSPECTOR2 | DNFTAAAQDLAQANTVTFPANISSMPEFRNWAKGKIATESARAVGEYSKIPDGLVKECPVVTDVSVPLDNVENKEMSLDVVNDLIEWLNNLADWRYVVDSEQWINFTNDTTYPTYDVPDPTEGLVRTVSDYRLTVDQGFWIGGQTSLPQYDVSEAYALLTFARPSSAAALAFVWAGLPQGGTAPAGTPAWEQASSGGYLTWRHNGTTFPAGSVSYVLPEGFALERYDPNDGSWTDFASAGDTVTFRQVAVDEVVVTNNPAGGGSAPTFTVRVPPSNAYTNTVFRNTLLETRRRLELPMPPADFNNPKIEQSLLKETLGCYLVHSKMRNPVFQ------LTPASSFGAVSFNNPGYERTRDLPDYTGIRDSFDQSCSIVTKTYQGWEGVTNVNTPFGQFAHADDLATRLTGVYN | |||||||||||||
5 | 4lo4B | 0.12 | 0.11 | 3.74 | 0.88 | SPARKS-K | ----------------TQRVLPYSNGLYVINKGDGYIRTNDKDLIGTLLIEAGSSGSIIQPRLRNTPLFTTSNDTKFSQQYTEERLKDAFNVQLFNTSTSLFKFVEEA---------------PSDKNICIKAYN----TYEKYELIDYQNGSIVNKAEYYLPSLG----YCEVTNAAEDGFIQNGPE--EEIVVGVIDPSENIQEINTAI-------SDNYTYNIPGINNNPFYILFTVN----TTGIYKINAIYEAIGSGNRNFQSGNLCDDKAINYITGFDSPNAKSYLVVLLNKDKNYYIPQTQFKREEGMNSSVNIIDNLNSTG--AHYYTRQSDVHDY-ISYEFTKDTSNIRLYTSYNQTLFRVTETGYNLINIQQNLHL--LNNTNSIRLLNGIYILKTELNNYNI | |||||||||||||
6 | 6em3x | 0.13 | 0.08 | 2.77 | 0.65 | FFAS-3D | NKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYEDDLMRYFNSNSNEPPKINVNAKKSAYEFANILIEI-------LPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVT--GLTFIHLPEGPTFYFKL--------------------------SSFVEHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGR-----------------------------------------------QVITLHNQRDYIFRRHRY-----------------------------------------VFKDNERVGLQE-LGPQFTLKLKRLQRGIKEETEWEHK-------------------------------------- | |||||||||||||
7 | 1ogmX1 | 0.16 | 0.06 | 1.92 | 0.33 | HHpred | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INTQTPVQPGQSHKYSVQVSL--AG---TNNFHDSFVYESIPRGNGRIDDGISIPSIGLNMAWSQFEYSHDVDVKILAT---DGSSGSPSDRPVSISYAISQ-------SDD-GGIVIRVPADANGRKFSVEFKTDLYTNEYVTSGGSVVGVEPTNALVIFAS--------------------------------- | |||||||||||||
8 | 5xxzA | 0.12 | 0.12 | 4.12 | 0.79 | MUSTER | AKLGDFYYVEDFAGNVA-IAKLGDHLPQTLGKTPIKLKLTDGNYQTKETLKDNLETQSDTGLVTNQAQLAVVHRNQPQSQLTK--NQDFFISPNEDGNKDFVAFKGLENNVYNDLTVNVYAKDDHQKQTPIWSSQAGAGAWYGITARGSKVPGDYQYVVTYRDEHGKEHQKQYTISVNDKKPITQGRFDTINGVDHFTPDKTKALGSSGIVREEVFYLAKKFDVTEGKDGITVSDNKVYIPKNPDGSLSDYYYLVEDRAGNVSFATLRDLKAVGKDKAVVNFGLDLPVIVNFTYLVRDADGKPIENLEYYNNS----GNSLILPYGK--TVELLTYAAKLESDKIVSFTLSANNFQQVTFKTLATSQITAHFDHLRVSLKTAQGQLIPLEQSLYVPKAYGEVVVSNEVHELSL | |||||||||||||
9 | 2xe4A | 0.08 | 0.06 | 2.37 | 1.07 | CNFpred | DPAVIEHLNKEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPYVY-----------------KYRYYTREV------------------------PYKIYCRVFTDKEPGDVAA----------EEVIIDVNQ-KAFCDVMEVKPAPEHDLVAFSVDMSG---NEVYTIEFKRISD--PSQTIADKVSGTNGEIVWGPD------HTSLFYVTKDET----------LRENKVWRHVMGKL----QSEDVCLYEEHN------PLFSAFMYKAATNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYDVQMHG---TSHLVILTNEGGAVNHKLLIAPR-DWSHVLVDHSDVFMESIAVRSNYLVVAGRLTRIWTMM----------------------- | |||||||||||||
10 | 5nhqA | 0.18 | 0.02 | 0.71 | 0.57 | HHsearch-2 | KRAQRILIFLLEFLLDFCTGEDSVDGKKR----QRHSGLTEQ----TYSALPEPKAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |