Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | VFASLSMPPQSLKKLITDTAKAGGVVVFRGFPNNSMKEFATRLGKIVDRQDDFANVGIDPRLFRAFDVQAVPTYVAVSSDFDLCAGFSCQTKVPPYDRIVGNVSVEYALEQF |
1 | 2vlvB | 0.15 | 0.13 | 4.50 | 0.97 | SPARKS-K | | AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWPCRIMAPVFADLAKKFPNAVFLKVDVPIAEQFSVEAMPTFLFMKEG-------------DVKDRVVGAIELTAKVGLH |
2 | 2vlvB | 0.16 | 0.13 | 4.43 | 0.78 | FFAS-3D | | -------SLEQWTMQIEEANTAKKLVVIDFTASGPCRIMAPVFADLAKKFPNAVFLKVDKPIAEQFSVEAMPTFLFMKEGDVK-------------DRVVGAIELTAKVGL- |
3 | 3d22A | 0.10 | 0.08 | 3.00 | 0.36 | HHpred | | -----ITTKERWDQKLSEASDGKIVLANFSARWCGSRQIAPYYIELSENYPSLMFLVILSDFSASWEIKATPTFFFLRDG-------------QQVDKLVGA-NKPELHKKI |
4 | 6i19A | 0.13 | 0.12 | 4.00 | 1.10 | MUSTER | | VIVIDS--KAAWDAQLAKGKEEHKPIVVDFTATWPCKMIAPLFETLSNDYAGKVILKVDAAVAEAAGITAMPTFHVYKDG-------------VKADDLVGASQLKALVAKH |
5 | 3d22A | 0.12 | 0.10 | 3.49 | 0.81 | CNFpred | | --HLIT-TKERWDQKLSEASRDGKIVLANFSACGPSRQIAPYYIELSENYPSLMFLVIDV-FSASWEIKATPTFFFLRDG-------------QQVDKLVGA-NKPELHKKI |
6 | 2hyxA1 | 0.09 | 0.08 | 3.03 | 0.35 | HHsearch-2 | | DFWAYSCIQRAIPHVVGWYQDSGLAVIGVHTPEKVPGNVAKGAANL----GISYPIALDNATWTNYRNRYWPAEYLIDATG------------TVRHIKFGEGDYNVTETLV |
7 | 2f51A | 0.18 | 0.16 | 5.23 | 0.92 | Neff-PPAS | | -IVHFNGTHEALLNRIKEAP--GLVLVDFFATWGPCQRLGQILPSIAEANKDVTFIKVDGNAADAYGVSSIPALFFVKKEG---------NEIKTLDQFVGADVIKADIEKF |
8 | 6g61A | 0.12 | 0.11 | 3.76 | 0.42 | HHsearch | | NGVVLVKSEEEFINAMSKAQDSPSVFYFTAAWCGPCRFISPVIVELSKQYPDVTTYKVDSNTISKLNITAVPTLHFFKGG-------------SKKGEVVGA-DVTKLKNL- |
9 | 1wmjA | 0.13 | 0.11 | 3.74 | 0.93 | SP3 | | C---HN--KDEFDAQMTKAKEAGKVVIID-FTAGPCRFIAPVFAEYAKKFPGAVFLKVDKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDD-----------LQNTIVKH |
10 | 2iwtA | 0.16 | 0.14 | 4.73 | 0.56 | PROSPECTOR2 | | EVISVH-SLEQWTMQIEEANTAKKLVVFTASWCGPSRIMAPVFADLAKKFPNAVFLKVLKPIAEQFSVEAMPTFLFMKEG-------------DVKDRVVGAIKLTAKVGLH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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