Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | STTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLAALENEMIIFTSPDLKPRVEAIRNGKPTTVIVIDIKKKFRYIRSRIEKIQKDESFTNRLEPRQLKNPEYWSPEYVLVCNLKAYFVNKAINMGLVKTPLVAWIDFGYCHKPNVTRGLKIWDFPFDESKMHLFTIKKGLTVTSQQQVFDFMIGNHVYIIGGAIVGSQHKWKEFYKLVLESQKITLNNNIVDDDQGIFVMCYYKRPDLFNLNYLGRGKWFDLFRCFRS |
1 | 4ayjA | 0.12 | 0.09 | 3.32 | 1.06 | HHsearch | | -MRI--GILYICTGK----------YDIFWKDFYLSAERYFDFIIEYYVFTDSPKLYD---EENNKHIHRIKQKNLG-WP-----------------------------------DNTLKRFHIFLRIKEQLERETDYLFFFNANLLFTSPIGK-EILPPSD--SNGL-LGTMHPGFNKTYERRDSTAYPEGRYYYAGGLSGGCTKAYLKLCTTICSWVDRDATNHIIPHDESLINKYFLDNPPA-ITLSP-AYLYPEGWLPFE- |
2 | 4wlmA | 0.11 | 0.09 | 3.41 | 1.02 | PROSPECTOR2 | | PYHLLMMFTKAEHN----------------APLQAKARVALKFEAHLHFVSEEASREVAKALLRELLCKVIFHDVAVLTDKLFPVVEAM-----------------QKYFSAYYSDSIFFLSVAMHQIM---PKEIPRIIQLDLDLKYKTNIRELFEEFDNFLPGAVIGIAREMQPVYRHTFWQFRHENPKTRPGFNSGVMLLNLEAMRQSPPSWVQQLADKYHFRGHLGDQDFFTMIGMEHPELFHVLDHGYSDVFQAYFRCEG |
3 | 5h60A | 0.12 | 0.10 | 3.60 | 0.83 | SPARKS-K | | KTPLLFQWFEFGKNDINTEKNP----------YLNNIIKAATIERLIGIFVDPGQKDAFSKLEYDYNIKVIYIDFSMYYMENISKQESLQLLKKELSDIQEGNDSLIKSYLGWFDFYRNMAMLKAGQLFLEADKVGSGCIYLDADMIIT-------EKLGGIYIPDGIAVHVERIDGR---------------ASMENGIIAVDRNN----HPALLAGLEIMHTKFDADPYSDGVCNGIRKHFNY-----SLNEDYNSFCDFIEF |
4 | 4wlmA | 0.12 | 0.10 | 3.47 | 0.91 | FFAS-3D | | DYHLLMMFTKAEHN----------------APLQAKARVALLAKFELHFVSEEASREVAKALLRELLCKVIFHDVAVLTDKLFPVVEAM-----------------QKYFSAYYSDSIFFLSVAMHQIM---PKEIPRIIQLDLDLKYKTNIRELFEEFDNFLPGAVIGIARFWQFRHENPKTRVGDPPPEGLPGFNSGVMLLNLEAMRQLYSHLPSWVQQLADKRGHLGDQDFFTMIGMEHPELFHVL---DCTW--------- |
5 | 1vztA | 0.09 | 0.07 | 2.77 | 0.56 | HHpred | | -VVTMTKWKAV---VWE------GTYNRA--VL-DNYYAKQKITVGLTVFAVGRYIHYLEEFNKHFPIFYIMVDDVSRM----PLI---ELGPL--RSF----KVFKIKPEKRWQDISMMRMKTIGEHIVAHIQEVDFLFCMDVDQVFQDKFGV--ETLG-----E-S-VAQLQAGWYKTYERRKESAYGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQDESHLNKYFLLNKPT-KILSPWDYHIG-------- |
6 | 5h63A | 0.11 | 0.11 | 3.81 | 0.64 | MUSTER | | QTPLVFQWFERNPDRFGQNEIPIINTQKN--PYLNNIINAAIIERIIGIFVDKGQRKALGKLEQNYR-NIKVIYNSDLYSMYDKKLTTIYLENITKLEAQSASERDEVLLNGVKKSLEDVLKNNPEETLISSHNKDKGHLWFDF-LKGSDAFLEAGKPGCHHLQPGGCIYLDADLLTDKLGTLYLPDGIKDNHVSLENGIIAVNRSEHPALIKGLEIMHSKPYGDPYND----WLSKGLRHY---FDGSHIQDYDAFCDFIEFKH |
7 | 1vzuA | 0.10 | 0.08 | 2.78 | 0.95 | CNFpred | | KITVGLTVFAVGR-----------YIEHYLEEFLTSANKHFMHPVIFYIMVDDV--SRMPLIELGPLRSFKVFKIKP---------------------------------EKRWQDISMMRMKTIGEHIVAHIHEVDFLFCMDVDQVFQD-------KFGVETLGESVAQLQAWW-FTYERRKESAAYIPEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAHDESHLNKYFLLNKPTKILSPE-------------- |
8 | 1vztA | 0.08 | 0.07 | 2.80 | 0.72 | HHsearch-2 | | EVVTMTKWKPVV---WE--------GTYNRAVL-DNYYAKQKITVGLTVFAVGRYIHYLEEFLKHHVIFYIMVDDVSRM----PLI---ELGPL--RSF----KVFKIKPEKRWQDISMMRMKTIGEHIVAHIHEVDFLFCMDVDQVFQDKFGV--ETLG------ES-VAQLQAGWYATYERRKSAAYPEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAHDESHLNKYFLLNKPTKILSPE--YCWDYHIGLPAD |
9 | 4wlmA | 0.12 | 0.11 | 3.71 | 0.70 | Neff-PPAS | | DYHLLMMFT----------------KAEHNAPLQAKARVALSLRLNLHFVSEEASREVAKALLREFKCKVIFHDVAVLTDKLFPVVEA-----------------MQKYFSAYYSDSIFFLSVAMHQIMPK---EIPRIIQLDLDLKYKTNIRELFEEFDNFLPGAVIGIAREWQFRHENPKTRVGDPPPEGLPGFNSGVMLLNLEAMRQS-PLYSHLLEPSWVQQLADGDQDFFTMIGMEHPELFHVLDCTYSDVFQAYFRCEG |
10 | 1vztA | 0.09 | 0.08 | 3.00 | 1.02 | HHsearch | | EVVTMTKWKPV---VWE--------GTYNRAVLDN-YYAKQKITVGLTVFAVGRYIHYLEEFLTGHPIFYIMVDDVSRM----PLI---ELGPL--RSF----KVFKIKPEKRWQDISMMRMKTIGEHIVAHIHEVDFLFCMDVDQVFQDKFGV--ETLG------ES-VAQLQAGWTYE-RRKESAAYPEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAHDESHLNKYFLLNKPTKILSPECWDYHIGLADIKL- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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