>PF09545 (366 residues) MTYYENIREMTKIVPVQLVNFEEPRDKARTPTQASSNFITNKEQGDWAENLIARAINETS NNFVAVKYGKSDNLVAGEDGFDAFYQDFQNELDTIGKRPDLLIFNKVDFDNSLGFDISQE PHEEITDYVKKAIAGIEVRSSAFLIDRYEEAMQARTEKFVQIALETKDKILTDFSDVLEH PARQSYIELLNSITASTLNVADFRVPSWSSSDRLIQVKNLFKQLKNAIKEIQKRDYLSIT PKVEDLKVVYKWIETFNVPHFYFQVFFDKVYGISFEQILKIISDSDNDGVIFSVETDTKN QNKTTIKINSKFGVPIALKVDEPLHESVRKEMDRGRLLFYVTFKGGTAYLDIENLRAILN LEESIF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MTYYENIREMTKIVPVQLVNFEEPRDKARTPTQASSNFITNKEQGDWAENLIARAINETSNNFVAVKYGKSDNLVAGEDGFDAFYQDFQNELDTIGKRPDLLIFNKVDFDNSLGFDISQEPHEEITDYVKKAIAGIEVRSSAFLIDRYEEAMQARTEKFVQIALETKDKILTDFSDVLEHPARQSYIELLNSITASTLNVADFRVPSWSSSDRLIQVKNLFKQLKNAIKEIQKRDYLSITPKVEDLKVVYKWIETFNVPHFYFQVFFDKVYGISFEQILKIISDSDNDGVIFSVETDTKNQNKTTIKINSKFGVPIALKVDEPLHESVRKEMDRGRLLFYVTFKGGTAYLDIENLRAILNLEESIF | |||||||||||||||||||
1 | 5amqA | 0.12 | 0.10 | 3.68 | 0.64 | SPARKS-K | FWKHPIYKEFKMSMPVPERRLFEESVKFNAYESERWNVKIREYTKKDYSEHISKSAKNIFL-------ASGFYKQPNKNEISEGWTLMVERVQDQRQKPSIHFIWGAHNPGN------SNNATFKLILLSKSLQSIAFKSLGKMAIEYEEFCMSLKSKARSSALSEKLKLFKNFCGIVSKPKDANMYLASLTMMEQSKKILSKSNGLKPDNFILNEFGSRIKDAYDNMHKIFETG--YWQCISDFSTLMKNILSVSQNRHNTFRIAMNNVFAIVF---------------------PSADTVVYSIIVLHKEEENIFN----PGCLHGTFKCMNGYISISRA-----IRLDKERCQRIVSSPGLFL | |||||||||||||
2 | 5nl6A | 0.14 | 0.08 | 2.78 | 0.84 | FFAS-3D | LDFLRATEGMVH------------------------DYEQRAQALENIEAAIYHQVKEQINETKNYRKGDKRAFIKEQGDLATLFGQINSKLRGMKRPV--------------YVAPEGLDPKSLEGYIAN-ISEAERALRSKLNTAMRNCLIALRKAFADPANATDAKI-NEYRTFVTDETSEEQVATLKAK-----------------LEELKQVEAQLPPIEEAEKACEDADNEYTDVSFDDLQ--FNYEQTVS----------------MFEKKIVYIEA---------------------------------------------------------------------------------- | |||||||||||||
3 | 2pffB | 0.15 | 0.12 | 4.15 | 0.58 | HHpred | YLEGNDIHALAAKLLQENDTKTKIRMAKRPFDSNSALFRAVG---------------EGNAQLVAIFGGQGNTDDY-FEELRDLYQTYH------VLVGDLIKFSAETLSEEWLENPSNTPDKDYLLSIPISCPLI------G-------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-LVTA-VAIAE---------TDSWESFSVRKAITVLFFIGVRCYE------AYPNTSLPPSILED-SLENNEGVPSPMLS-----ISNLTQEQVQDYVNKTNSAGKQVEIVNGAKNLNLTLRKAKAPS---GLDQSRIPFSE--RKLKFSNRFLPVASPFHSHLLVASDLINKDLVKNNVSF | |||||||||||||
4 | 3ld1A | 0.13 | 0.11 | 4.01 | 0.61 | MUSTER | RDVIKDIPEQLCDALF-FYTSHNPKDYADA-FAVRQKFDRNLQTGKQF---------ETVCGLFLLKGGVPAKVLKATADLEDIFSPFARKYRELLKTACQWSLTVETLDARALTLDEIFDPTEILWLQVAAKIQVSAMAMRRLVGEVTAKVMDALGSNMSALFQIFKQQIVRIFQAALAIFVSELPQRIAALKMAFAKCAKSITVVVMERTLVVREFAGT-CLASINGAVAK--------FFEELPNGFMGAKIFT------FAFFREAAVK----IVDNIPNAPRGTKGFEVVGNAKGTQ-VVVRGMRNDLTLLDQKAEIPVESEGWSAILGG-HLCYVFKSGDRFYAANFALHDVHCCERVVC | |||||||||||||
5 | 5h8wA | 0.11 | 0.09 | 3.14 | 0.72 | CNFpred | ---DETKRFLFDELPTA------------------EEFYDYGERNNVCPYESMKAALPD-ADIVIAPYA----YFLNRSVAEKFLSHWGVSR-----NQIVIILDEAH---------------NLPDIGRIGSFRISVESLNRADREAQAYGDPHVSDLIEMIRSALQSMVSERCGKGDVRIFQEFMEYMRIMNK-------------RSEREIRSLLNALYLFEYVENEKEKVGKVPFSYASSVASRIIAFSDQDEKYAAILSPGYMQAAALDPSGILEVLK-------------------ESKTIHMSGTLDPFDFYSDITGFEIPFKKI-PENRYIAYYDGVSSKTLDEKELDRMATVIEDII | |||||||||||||
6 | 2pffB | 0.12 | 0.11 | 4.02 | 1.26 | HHsearch-2 | MDYSTRPLTLSHGVPTASEGFAADDEPTTPAELV-GKFLGYVGQFDQVLNLCLTEFENCYLEGNDIHLENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNEWLENPSNTPDKDYLLSIPISC-------------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAEDSWESFFVSVRKAITVLFFIGVRYAYPNTSLPPSILEDSLEN---NE----GVPSPMLSISLTQEQVQDYVNKTNSHGKQVEISLVAKNLLYGLNL----TLRKAKAPGLDQSRIP--F-SERKLKFSLPVASPFHSHLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVSERIVDCIIRLPVKWE | |||||||||||||
7 | 4widA | 0.10 | 0.08 | 3.17 | 0.90 | Neff-PPAS | MALQHAVDLLEKMLADEEKANDDPIKTLEEIIQEGDDVVGAHQLVVTQIKLRVQRNRRLADEIIREQLTDIRKVFSDKQGIQNSYLLLDKLKTPFQDMRCLFEVANEQFNDTPVPPQYKE----FMVCLKQIVQYAVNSSSLEKFVMLITKKDDIKDRVTYTCMKYLLMAMQGTGGPKAINNEEHAKLFFQ--------LSNYDDLTDANHDGLELIKKLDKEQKEVAFHVNNFTHLVTALYKEGHQKNDEAMLGMHTPITMLSDQVRVLILYLIDEIVHAIHTNSNQS-----NDELIDGLKPKVRIVINEFHATLMMGIDKMKFY-----------------------SLNELREIVNDKI--- | |||||||||||||
8 | 2pffB | 0.14 | 0.12 | 4.00 | 0.96 | HHsearch | YLEGNDIHALAAKLLQENDTKTKIRMAKRPFDSNSALFRAVG---------------EGNAQLVAIFGGQGNTDDY-FEELRDLYQTYH------VLVGDLIKFSAETLSEEWLENPSNTPDKDYLLSIPISCPLI------G-------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-LVTA-VAIAE---------TDSWESFSVRKAITVLFFIGVRCYE------AYPNTSLPPSILED-SLENNEGVPSPML-----SISNLTQEQVQDYVNKTNSAGKQVEIVNGAKNLNLTLRKAKAPS---GLDQSRIPFSER--KLKFSNRFLPVASPFHSHLLVASDLINKDLVKNNVS- | |||||||||||||
9 | 5e0cA | 0.15 | 0.13 | 4.25 | 0.95 | SP3 | VT-RELIKTIADEIPVTWENQMGNAPDYTINE----DFFSREQVIDWALEEVM--LNHDSWLWI-------YNMEHNYDEVMAKYTALWEQLSERFQHSHKLMFESVRFTRDWGEIQ----------------------------ENHHAFLEELNTAFYHIVRESGSNVLPTLETATSQDLLNRLHQTMKDLNDPNLSVNVAGYTRFEE-ETQQDIIDTFNRVHNTFTANGITDVIQQGEKLKFFEFLIHHLNERDVTHMLWDQHLNETYSWYDQEFHNMLKASATAESNLIHVRDGEPIRDQDIQLHLHGNELTGLQVDG-------DSLALGE---DYELAGDVLTMKADALTALMTPGELGT | |||||||||||||
10 | 4fxqA | 0.15 | 0.13 | 4.33 | 0.93 | PROSPECTOR2 | -ENSKKTQELVEKLPHEVKGGKEPSLIIHAEDYASHLSSVELNQKELGNPKFINAINEVNQQ----KEGKGVNAKADEDGRDLLFGK---ELKKNLEHGQ-----------LVDLDLISGNLSEFQHVFAKSFALYYEPHYKEALKSYAPALFNYMLELDQMRFKEISDDVKEKNKNVLDFKWQTFKNWKENLTIKYDGEIIPNIGGDLDKKSKKALEKIENQIKNLDAALQK---SKITENLVSELQFGKKYEDYNL------RQNGIINEEKVMELESNFKGQTFIQHNYMHQSYSNDRYPILLEITIPEGVHGAYIADMSEDKFSIVKPGKEYLKVNLSI---------------------YL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |