Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | EEFSKEWKDASDKWNAMWAVKIEQTKDGKHYVAGIGLSMEDTEEGKLSQFLVAANRIAFIDPANGNETPMFVAQGNQIFM |
1 | 4indA2 | 0.08 | 0.07 | 3.01 | 0.68 | SPARKS-K | | SQVTQSILNVQGS-GSHLRLKYASVSGTAVTQCQLQATWDFIAGGSSTREINSIQLVANGGSSTSSVTITLILVYEQIAG |
2 | 1s2eA2 | 0.13 | 0.11 | 3.88 | 0.50 | FFAS-3D | | ------LFHRTEYNMAKLLVTCQSVDGRKIKTAEINILVDTVNSE------VISSEYAVMTEEDEIANIAFSIKENYVT- |
3 | 4qxlA | 0.17 | 0.15 | 4.91 | 0.19 | HHpred | | ---------PVSGVMTLVAWRYELNGAGL--RVRLSRCVELDGQSGTTHGHVPAVRFVWEVPGGGRLIPALKVRSNQVIV |
4 | 1f02I1 | 0.09 | 0.09 | 3.35 | 0.84 | MUSTER | | ASITEIKADKTTNGQDAITYTVKVMKGDKPV-SNQEVTFTTTLGKLSSTEKTDTNKVTLTSTTPGKSLVSARVSDVAVDV |
5 | 3e5zA | 0.11 | 0.07 | 2.74 | 0.65 | CNFpred | | --------------------GLRVDAGGLIWASAGGVHVLTPDGDELGRVLTTTSNLCFGGP---EGRTLYMTVSTEFWS |
6 | 2k49A | 0.12 | 0.09 | 3.11 | 0.42 | HHsearch-2 | | -------------MSGWYELSK--SSNDQFKFV-----LKAGNGEVTSENSPIEARYAKEVAKNDKPYFNLKAANHQIIG |
7 | 1cwvA1 | 0.11 | 0.11 | 4.03 | 0.79 | Neff-PPAS | | -AVIGDGAPANGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKITEKTDANRIALTNTTDGVTVVTAEVEGQRQSV |
8 | 5tv5A1 | 0.14 | 0.09 | 2.99 | 0.34 | HHsearch | | ----------------LFSVRMRAQKNGKHVSGAERIVKKEELETAVKELLNEFDFMNV------------KVEKVKD-- |
9 | 4o2wA2 | 0.12 | 0.11 | 3.96 | 0.68 | SP3 | | --VVTQLVTSCGS----DGHSMALTESGEVFSWGDGLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFT |
10 | 2fsdA | 0.11 | 0.11 | 4.04 | 0.47 | PROSPECTOR2 | | DIPWTDLNRASGVYVRGNSIPVPNVAPNFIVPVGSSGTFYSHGNLSLSLINMSPSGIAVGNPNNTSMNGKTISFALSAPL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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