Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | LGWLFESGRRFFDWIKGVFKPFQYSILAEFGSGDPAYDWITLLLTEEKIWNRSRRFRVHSTSSQRRWSVELKSQKQRQDQSSKDHAEYVPQYQKEQLFKWKGYWVHVSKSNVSDPYHHQRRHSGVQPDHGFLFLTLYTRDMSVLSALVEDARERYLKASEPHVIVHTADMGAFDQGDTLWSLAKRKARRPLSSI |
1 | 5cw9A | 0.09 | 0.07 | 2.52 | 0.68 | SPARKS-K | | -----------------------MEMDIRFRGDDAYYKALREMIRQARKFAGTVTVTLIIRFRGDDLEALEKALKEMIRQARK--------FAGTVTYTLDGNDLEIRITGVPPQEAIRLAKEFNITVTVELVIRITGVPEQVRKELAKEAERLAKEFNITVTYTIRL-------------------------- |
2 | 6govU | 0.08 | 0.06 | 2.46 | 0.56 | FFAS-3D | | RGFGHTLGNALRRILLSSMPGCAVT-EVEIDGQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR---IKVQRGRGYVPASVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ------------------------------------ |
3 | 5cw9A | 0.08 | 0.06 | 2.23 | 0.24 | HHpred | | -----------------------MEMDIRFRGDDEYYKALREMIRQARKFAGTVTVTLIIRFRGDD------LEALEK--ALKEMIRQARKFAGTVTYTLDGNDLEIRITGVPPQVILEEAIRLAKEFNITLVIRITGVPEQVRKELAKEAERLAKEF--NITVTYTIR------------------------- |
4 | 5cw9A | 0.10 | 0.08 | 2.83 | 0.70 | MUSTER | | ---------------------MEMDIRFRGDDPEAYYKALREMIRQARKFAGTVTVTLIIRFRGDDLEALEKALKERQARKFAGTVTYTLD-GNDLEIRITGVPPQVILELVKEAIRLAKEF--NITVTVELVIRITGVPEQVRKELAKEAERLAKEF--NITVTYTIRL------------------------ |
5 | 2f7lA | 0.14 | 0.08 | 2.64 | 0.68 | CNFpred | | FALMLELLANENVSSAELFDPKYYLVKTKVDLPGLMVEEIYKKILEVYST---SSVKAITI--------------------------------DGVKIIGKDFWFLVRKSG----------------TEPIIRIMAEAKDENVANNLVNELKKIVEGK------------------------------------ |
6 | 5kzfA | 0.15 | 0.08 | 2.61 | 0.96 | HHsearch-2 | | -------------------------------------------------------------------------------PSGYGV-LLATHDDDTVDVFTSGRKMRLTCSPNIDAASL--------KKGQTVRLEAGTGEISTLREILADGHRALVVHADEERVVWLADPL-----IAEDLPTRPRKLRPGDSL |
7 | 4hhuA | 0.09 | 0.07 | 2.74 | 0.70 | Neff-PPAS | | -----------------------GVVIVFEGDDLEALEKALKEIRQARKFASGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIGSGSGVVIVFEGLEALEKALKEIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQITGSLEHHHHHH----------------- |
8 | 2kl8A | 0.10 | 0.04 | 1.54 | 0.33 | HHsearch | | -----------------------MEMDIRFRGDDEFEKALKEMIR------------------------------------QAR------KFAGTVTYTL---------------------------DGNDLEIRITGVPEQVRKELAKEAERLAKEF--NITVTYTIRLEH---HHHHH-------------- |
9 | 4ykeA1 | 0.08 | 0.07 | 2.88 | 0.66 | SP3 | | KDDSWRTFDEIMQLARTKLFHDN-------KPSRKAMYQVMRSLRKNCLGMKPCELEFLSDPAEVFEGAFPHVNYYDPDINVSIPVFSIHHLCSLDLLQVAGLVNYF--GRVPEADNIHVKPILLQKGKTKLALYGMSVRDERIHRTFRDNKVRFYRPTGDWFNLLTLHQNHYAHTPTGYLSENMLPDF----L |
10 | 6f9gA | 0.06 | 0.05 | 2.31 | 0.69 | PROSPECTOR2 | | FMDAYQYGNGFARLVQVLKDR----------GGSDLRAELTRQARASAGNPDVIGLYLVFQPNALDQQDSHYLGQDAMGSNESGRFSLY------WSQPSPGTLELEAMPETMLGDTSIGSNGAAKNGRQVLMTSIALPGLANLQQLSVNGRRDLFDGQAAGLLAGNSRDDSVLGKPMDAHPFTPIPDTALPES |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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