Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | SAVAQGDFQKAVICVQRCKDMLMRLPKETCYLSLLCYNFGVETYEQKRYEQSSFWLSQSYEIGKMDKRYSTGQEMQAKVLRLLATVYLEWDCKVYQDKALQAISLANKENLHPAGFFLKIQILLKSGAADEDLSTAIAEIMHHEVSLDFCLNTAKMLLEHNRELVGFDFLKSVAGRFESSPDLGKVILLHIEFLLQRMREPLAKQKIEDIITGHYTGKQLSAETLNQLHIILWDRAAKNYEAKNYPEALQWYNYSLS |
1 | 4i1aA | 0.09 | 0.08 | 3.14 | 1.49 | SPARKS-K | | YEFRRKELISAISAYRIAESKLSEV-EDEIEKAEFFFKVSYVYYYMKQTYFSMNYANRALKIFREYE---EYAVQTVRCQFIVAGNLIDSLE---YERALEQFLKSLEISHLIAMSHMNIGICYDELKEYKKASQHLILALEISFLTKTLFTLTYVEAKQQNYNVALIYFRKGRFIASDDKEYSAKFKILEGLFFSDGETQLIKNAFSYLASRKM---------FADVENFSIEVADYFHEQGNLMLSNEYYRMSIE |
2 | 5gmkd | 0.08 | 0.07 | 2.80 | 2.32 | FFAS-3D | | LDLEEEYQRRKRTEYEGYLKRNRLD-------MGQWIRYAQFEIEQHDMRRARSIFERALLVDSSF----------IPLWIRYIDAELKVKC---INHARNLMNRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVDFEIRQKNWNGVREIYSKYVMAHPQ----MQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWEAAQQEYERSSALYQIAIE |
3 | 5o09C | 0.12 | 0.12 | 4.23 | 2.58 | HHpred | | IFKQLRKFERAEGYYCEALETFQRLDGQSARVASVYNNLGVLYYSHMDVDRAQVMHERALAIRQNLHEGQMDPADLSQTFINLGAVYKAAGD---FQKAEACVDRAKRINGEIASQISVLADLRQKGDFRKSYREALF-RAQDPDLTGIYSLLAHLYDRWGRMDKAAEFYELLKISLEESDKVATIKNNLAMIFKQLRKFERAEGYYCEALETQRLDGEQS----ARVASVYNNLGVLYYSHMDVDRAQVMHERALA |
4 | 4i1aA | 0.09 | 0.09 | 3.25 | 1.56 | MUSTER | | YEFRRKELISAISAYRIAESKLSEV-EDEIEKAEFFFKVSYVYYYMKQTYFSMNYANRALKIFRE---YEEYAVQTVRCQFIVAGNLIDSLE---YERALEQFLKSLEISHLIAMSHMNIGICYDELKEYKKASQHLILALEISFLTKTLFTLTYVEAKQQNYNVALIYFRKGRFIADDDKEYSAKFKILEGLFFSDGETQLIKNAFSYLASRKM---------FADVENFSIEVADYFHEQGNLMLSNEYYRMSIE |
5 | 4a1sA | 0.09 | 0.09 | 3.27 | 1.37 | CNFpred | | AYFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----GDRLSEGRALYNLGNVYHAKGVKEALTRAVEFYQENLKLM-AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ-----ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ |
6 | 5o09C | 0.13 | 0.12 | 4.35 | 0.49 | HHsearch-2 | | IFKQLRKFERAEGYYCEALETFQRLDEQSARVASVYNNLGVLYYSHMDVDRAQVMHERALAIRQNLHEGQMDPADLSQTFINLGAVYKAAGD---FQKAEACVDRAKRIRAAAASQISVLADLRQKGDFRKA-ESLYREALFLQDPTGIYSLLAHLYDRWGRMDKAAEFYELLKISLEESDKVATIKNNLAMIFKQLRKFERAEGYYCEALETQRLDGEQSARVASVLSQTFINLGAVYKAAGDFQKAEACVDRAKR |
7 | 4i1aA | 0.09 | 0.09 | 3.26 | 1.75 | Neff-PPAS | | YEFRRKELISAISAYRIAESKLSEV-EDEIEKAEFFFKVSYVYYYMKQTYFSMNYANRALKIFREYEE---YAVQTVRCQFIVAGNLIDSLELEQFLKSLEISKESNIEHLIAMSHMNIGICYDELKEYKKASQHLILALEIFSFLTKTLFTLTYVEAKQQNYNVALIYFRKGRFIADKSKEYSAKFKILEGLFFSDGETQLIKNAFSYLASRKM---------FADVENFSIEVADYFHEQGNLMLSNEYYRMSIE |
8 | 6gmhQ | 0.11 | 0.10 | 3.62 | 0.73 | HHsearch | | LHFRLGNLGEAKKYFLASLDRAKAEDEYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNY----------VDCYLRLGAMARDKGN---FYEASDWFKEALQINQDHPDAWSLIGNLHLAQEWGP-GQKKFERILKQPTDTYSMLALGNVWLQKRHQDRALAIYKQVLR---NDAKNLYAANGIGAVLAHKGYFREARDVFAQVREA----TADISD-------VWLNLAHIYVEQKQYISAVQMYENCL- |
9 | 5gmkd | 0.09 | 0.08 | 3.13 | 1.60 | PROSPECTOR2 | | D---ILDLEELREYQRRKRTEYEGYLKRNRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDSSF----------IPLWIRYIDAELKVKC---INHARNLMNRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVDFEIRQKNWNGVREIYSKYVMAHPQ----MQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWEAAQQEYERSSALYQIAIE |
10 | 3cvnA | 0.10 | 0.09 | 3.27 | 2.15 | SAM | | -MLKLANLAEAALAFEAV---CQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----------IAVHAALAVSHTNEHN---ANAALASLRAWLLSQPQYEQLGSVNLFFFAANEYRE-CRTLLHAALEMPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI----NPGYVR-------VMYNMAVSYSNMSQYDLAAKQLVRAI- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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