Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | FNSFENYFRELTEFLLNGRAPLNVLVHHIMLYHYYPTSMKDVLWKAVEVYLDIHCTEDRYCRVQVEAAKRRLGDIRLYLVYPRDIYKFTNSKDWIAVATRGFMSYIQTRNPLCLGSIPVNNKSISELLSYTTSTDCMAWLSLLICAGSNGSRFPLHKYINTKTRIMKSKTSITDFLFSDEDLLFFQDKESITEFKPLQQQLLRELADCDA |
1 | 4uegA | 0.12 | 0.11 | 3.89 | 0.55 | SPARKS-K | | NDIYCQGALVLGQSLRRLTRKLVVLIT-----PQVSDLLRRILSKVFDEYIHLAFLKRELGLTLTKLHCWTLTHYKCVFLDA-DTLVLSNRGEFSAAPDDCFNSGVFVFQP--------SLHTHKLLLQHAFDGADQGLLNSFFRWSTTDKHLP-FIYNLSSSPAFKQFGSSAKVVHFLGSMKPWNYKYQAAFLHLWWTVYQNNVLPLYK |
2 | 3eslB | 0.12 | 0.10 | 3.35 | 0.69 | FFAS-3D | | ----IAYEQRLLNDLEDMDDPLDLFLDYMWISTSYIEVLRSTMERCLIYIQETYRNDPRFLKIWIWYINLFLSN---NFHESENTFKYMFNKG---IGTKLSLFY-------------------EEFSKLLENAQFFLEAKVLLELGAENNCRPYRSLSNYEDRLREMNIV--------------ENQNSVPDSRERLKGIRKFLT---- |
3 | 1zkoA | 0.16 | 0.09 | 3.01 | 0.33 | HHpred | | --------------------------HHHHLKKKYTK---THEWVSIED----KVATVGITN----HAQEQLGDVVYVDLPVGRE--VKKGEVVASIESVK--AAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFK-EISDEGEDLLDEQAYQEF------------------------------------------------- |
4 | 2aytA | 0.09 | 0.09 | 3.26 | 0.57 | MUSTER | | LN--LDVRMQLKELAQKFKEPVSI----KLFSQAI-QTAEELLKETVEVIGEAVGQDKSPFTHKEETEKYGVDRVPTIVIEGDKDYGI----RYIGLPAGLFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPGYCPSAAVMAWDFALANDYITSKVIASENQDLAEQFVVGVKIVINKGVAEFVGAQPENAFLGYIMAVYEKLKREKEQ |
5 | 1gz3A | 0.10 | 0.08 | 3.02 | 0.65 | CNFpred | | IETQDIQALRFHRNLKKMTSPLEKYIYIMGIQER----NEKLFYRILQDDIESLMP-IVYTPTVGLACSQYG-PKGLFISISDHVRSIVNHVKAVVVTDG----ERIL--------------GLGDLGVYG-MGIPVGKLCLYTACAG-DQCLPVCIDVGTDNIALL----KDPFYMGLYQKRDR-----TQQYDDLIDEFMKAITDRYG |
6 | 3dryC | 0.13 | 0.06 | 2.15 | 0.34 | HHsearch-2 | | IDRDPTYFGPVLNYLRHGKLVINGVLEEAEFYNI--TSLIKLVKDKIRERDSKTSQVPQEEELTQMVSTMSDGWKFEQLVSIGSSYNYEDQAEFLCVVSKELH----------------------------------------------------------------------------------------------------------- |
7 | 5cwqA | 0.11 | 0.11 | 3.94 | 0.68 | Neff-PPAS | | -ERRLQEARKRSEEARERGDLKELAEALIEEARAVQELARVACERGNSEEAERASEKEEARKVSEEAREQGDDEVLALALIVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGD---SEVKRLAEEAEQLAREARRHVQECRG |
8 | 4ds1A | 0.12 | 0.05 | 1.70 | 0.27 | HHsearch | | ---------------------STP----IVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYG------------------NTWHVIVGKNFGSYVTHEKG-HFVYFYIGPLAFL-VFKTA------------------------------------------------------------------------------- |
9 | 4eekA | 0.07 | 0.07 | 2.69 | 0.50 | SP3 | | VESEGIIAQVWQSVLAEGHLDLTEIAMYFTFDGVLPPDFLDVLETRFNAAMTGVTAIEGAAETLRALRAAGV---PFAIGERGRLHLKLRVAGLTELAGEHIYD-----PSWVGGRGKPHPDLYTFAAQQLILPERVTGGAAGLAAGATLWGL--------LVPGHPHPDGAAALSRLGAARVL----TSHAELRAALAEAGLLTPA--- |
10 | 3tnfB | 0.10 | 0.10 | 3.70 | 0.69 | PROSPECTOR2 | | LDEYEQAIKRAKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKTDPKENEEATKLLHNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESITTIHKERVEETKQISK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|