Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | KGKVGERRVKSVSSRLDPNQYTIFHDVTLPTTNGTTQIDHIIISRQGIFVIETKNYSGWIFGSEKSRFWTQVIYKAKNKFQNPLLQNYKHIKTLQKLLQLPIHYFHSVIVF |
1 | 1ob8B | 0.18 | 0.13 | 4.11 | 1.18 | HHsearch | | IGKNAERELVSILRGE---GFNAVRIPT------NPLPDIFATKGNTLLSIECKSTWENKV---------KV---------KE-----HQVRKLLDFLSMFTMKGVPLIA- |
2 | 1ob8B | 0.18 | 0.13 | 4.12 | 1.07 | SP3 | | IGKNAERELVSILRGE---GFNAVRI------PTNPLPDIFATKGNTLLSIECKSTWE-----------------NKVKVK------EHQVRKLLDFLSMFTMKGVPLIAI |
3 | 1ob8B | 0.20 | 0.14 | 4.60 | 0.91 | SPARKS-K | | IGKNAERELVSILRGEG---FNAVRI----PTNPL--PDIFATKGNTLLSIECKSTW-----------------ENKVKVK------EHQVRKLLDFLSMFTMKGVPLIAI |
4 | 1ob8B | 0.18 | 0.13 | 4.12 | 0.89 | FFAS-3D | | IGKNAERELVSILRG---EGFNAVRI------PTNPLPDIFATKGNTLLSIECK-----------------STWENKVKVK------EHQVRKLLDFLSMFTMKGVPLIAI |
5 | 1y88A | 0.12 | 0.11 | 3.81 | 0.54 | HHpred | | NLYFQGHMVARLLEEHG---FETKTNVIVQGNCVEQEIDVVAERDGERYMIECKFHNIP-VYTGFTQPWIFT----NTKFSEEAKKYAGCVEGIEVLLESKGYPITI---- |
6 | 1y88A1 | 0.11 | 0.08 | 2.95 | 0.90 | MUSTER | | NLYFQGHMVARLLEEH---GFETKTNVIVQGNCVEQEIDVVAERDGERYMIECKFHNIPVYTG--------------------LKEAMYTYARFLDVEKHGFT--QPWIF- |
7 | 1xmxA | 0.16 | 0.13 | 4.18 | 0.77 | CNFpred | | NGEWLETLVHSTVKQIQPTIQDRSLNVQVYRQEVRNELDVATVVNNKLHIIECKTK-------------------GMRDGDDTLYKLESLRDLLGGL------QARAMLVS |
8 | 1ob8B | 0.18 | 0.13 | 4.12 | 0.76 | HHsearch-2 | | IGKNAERELVSILRGEG---FNAVRIPT------NPLPDIFATKGNTLLSIECKSTWENKV--------K-V---------K-----EHQVRKLLDFLSMFTMKGVPLIAI |
9 | 1y88A1 | 0.11 | 0.08 | 2.95 | 0.91 | Neff-PPAS | | -LYFQGHMVARLLEEH---GFETKTNVIVQGNCVEQEIDVVAERDGERYMIECKFHN--------------------IPVYTGLKEAMYTYARFLDVEKHGFT--QPWIFT |
10 | 2wj0A | 0.11 | 0.09 | 3.22 | 1.16 | HHsearch | | KGTRFERDLLVELWKAG---FAAIRVAGSGV-SPFPCPDIVAGNGRTYLAIEVKMRKELPLY-------------------LSADEVEQLVTFARGYVALKRKKWRFFPV- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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