Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LPTSFLYLFVIGIWNYRFRPRNPPHMDARLSQAEAVHPDELDEEFDTFPTSRPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAILSWRDSRATAIFIIFSLIWAVFIYITPFQVVAIIVGIYMLRHPRFRSKFPSVPVNFFKRLPSKSDTLL |
1 | 5cwfA | 0.11 | 0.10 | 3.71 | 0.72 | SPARKS-K | | KVMEALKKAVELAKKN---------NDDEVAREIERAAKEIVEALRENNSDEMAKVMLALAKAVLLAAKNNDEVAREIARAAAEIVEALRENNSDEMAKVMLALAKAVLLAAKNNDDEVAREIARAAAEIVEALRENNSKMLELAKRVLDAAKNND |
2 | 6bfiA1 | 0.06 | 0.06 | 2.51 | 0.72 | FFAS-3D | | -PVAQQVGQLVLFHEQAESGLLKEDLTPLVQGVGIA-VTNLVQVAASMVETSNDEDFKAELPPSMQEVQQAAVFLSDAARLLEGKRKLL-----DGARGVINGMSDLLMCADRSEVRKMVKVCRSVQEYLDVAKVIDVADLATFLQNLTPGMTSM- |
3 | 1xg7A | 0.15 | 0.13 | 4.52 | 0.26 | HHpred | | -EMFIKLVIANSLVSYQLTGRGEDWWW-EFAYFSGREVDSIWKAYGEFPKSKNRRLIEAKLNRIRKVEGFLSTYYKNMKMLWKALIKIMGSREDSKTIVFTVKMFGYASRIAFIPLRIKSVTSK---L--------TQEKPTKFWMKIGQE----- |
4 | 3u44A | 0.09 | 0.09 | 3.40 | 0.74 | MUSTER | | RHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSA---IEELPFYQYKEDIAMVLNGAKEKLLRALELTDNFLDDLAQIDELIQHQDDFSELYKRVPAVSDPALLDEATDLRNGAKKLLEKLKT-DYFTRSPEQHLKSLAEMKPVIETLV |
5 | 5hjnA | 0.07 | 0.06 | 2.61 | 0.73 | CNFpred | | --LYPITSILLHFMSEEE------AYICLAGLVGSKEKVFINQ---------TKLQHEVTWKTVMQIAKKHTKSATSYFQR-DWCWWILAGLFQHLVRIMDCYFHEGIKVLYRVALVILNLFHKECQS-PDNIKNDIGNALIKFCKKIPVSPAKLL |
6 | 2pffB | 0.17 | 0.17 | 5.47 | 0.78 | HHsearch-2 | | EPTTPAVKTKELIKNYIIMAKRP--FDKKSNSALFRGNAQLVAIFGGQGNTDYFEELRDLYQTYHVL---VGDLIKFSAETLEKVLNILEWKDYLLSIISCPLIGVIQLAHYVVTAKLLLFFIGVRCYLPPSNNENLTEQVQNKNSHLPAGKQVEI |
7 | 3rh2A | 0.09 | 0.09 | 3.38 | 0.70 | Neff-PPAS | | -EDIIRCIFDQYEQHLLLGFKPYADQKVDLELLSYFDAFYTWQFRFYANLADILARDDTLKARYLKVQQAVLEQSIAVLNQLKKDG-ILQIEDERIADLADTIKIIGFWISYKLSKASLYEGLLRVLIFKAYSTPDSLANFDRLEQHFRSQS---- |
8 | 6nchA1 | 0.09 | 0.04 | 1.45 | 0.50 | HHsearch | | -------------------------TIKWIDWV-----KQIQSAQAGLTYS-KDVYDIERFQQLRDISISMMSHYTKT--DWEVVEKLFASETGYQT----------------------------------------------------------- |
9 | 3u44A | 0.09 | 0.08 | 3.22 | 0.61 | SP3 | | RHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKS---AIEELPFYQYKEDIAMVLNGAKEKLLRALELTDNFLDDLAQIDELIQHQDDFSELYKRVPAVSDPALLDEA-TDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLV |
10 | 3i0oA2 | 0.10 | 0.10 | 3.60 | 0.67 | PROSPECTOR2 | | LTGKQWKQLGKVLRQIHETSVPISIQQQLRKEIYSPKWREIVRSFQIEFDNSDDKLTAAFKSFFNQNSAAIHRLVDTSEKLSKKIQVGNVWNKPHEIQYFYEGYGKTILSYYRHERIVEDIAVYGQDLLSRNQNNQSRLESFKYFKEMFDFATEQL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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