>PF07946 (333 residues) SYYMEILMVTGLLAYIMNYIIGKNKNSRLAQAWFSSHRELLESNFALVGDDGTSKEAVST GKLNQENEHIYNLWCSGRVCCEGMLIQLKFLKRQDLLNVLARMMRPACDQVQIKVTLNEE DMDTFVFAVGTKKAMARLQKEMQDLSEFCGDKPKSGAKYGLPESLAILSEMGEVTDGVMD NKMVHYVTNNADKIESIHFSDQFSGPKVMQEEGQPLKLPETKKTLLFTFNVPGMGNTSPK DMDALLSLMNMVIYSIDKVKKLRLNREGKQKADRNRARVEENFLKQTHAQRQEAAQTRRE EKKRAEKERIMNEEDPERQRRLEEAAQRREQKK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SYYMEILMVTGLLAYIMNYIIGKNKNSRLAQAWFSSHRELLESNFALVGDDGTSKEAVSTGKLNQENEHIYNLWCSGRVCCEGMLIQLKFLKRQDLLNVLARMMRPACDQVQIKVTLNEEDMDTFVFAVGTKKAMARLQKEMQDLSEFCGDKPKSGAKYGLPESLAILSEMGEVTDGVMDNKMVHYVTNNADKIESIHFSDQFSGPKVMQEEGQPLKLPETKKTLLFTFNVPGMGNTSPKDMDALLSLMNMVIYSIDKVKKLRLNREGKQKADRNRARVEENFLKQTHAQRQEAAQTRREEKKRAEKERIMNEEDPERQRRLEEAAQRREQKK | |||||||||||||||||||
1 | 6gmhQ | 0.14 | 0.12 | 4.20 | 1.38 | HHsearch | KLYKNILREHYVDCYLLGAMARDKGNFYEASDWFKEALQI---N-------QDHPDAWSGNLLAKQE------WGPGQKKFE---RILKQSTQSDTYSMLLGLHQPTRDREHQDIVL--RNDAKNLYAA---NGIGAVLKGYFARDVFAQVRE---ATADISDVWL------NLAHIYVEKQYISAVQMYENCLRKFYKQNTEVCGKLQECKQKARHVAPSDTVLMFNVVLKDE-KSNLKEVLNAVKELELAHRYFSYLSKLALAATEARQCSDLLSQAQYHVAAKQEQEKELLRQKLLKEQEEKRLREK------EEQKKLLEQRAQVEKT- | |||||||||||||
2 | 5gnrA | 0.11 | 0.09 | 3.38 | 1.04 | PROSPECTOR2 | PIFDQLLEFVTEGSHFVEATYKDLVEMQGYKDKLSIIGEVLSRRHMKVWDKVLPSGIGHITNCF-----LSVEGTDGDKA------YLMTEGSDEKKSVKTVNQLAAGCLVRVFWPKAKCAADVFVLVANMNTEKHFFHKVNER----------------LSKPNIFIASEPEYMEDVRRQHMERCLHFLVEEL-------------------KVVNALEAQNRIFFKQKAQGSGVALAEGFHARLQEFQNFEQIFEECISQSAVKTKFEQHTIRAKQILATVKNIMDSVNLAAEDGSGLPKEIDQLEKIQNNSKLVQLENELENFTKQFLPS | |||||||||||||
3 | 5cqcA | 0.11 | 0.10 | 3.54 | 0.59 | SPARKS-K | ----------SIYPPETSWEVNKGMNSSRLHKLYSLFFD--KSSAFYLGDDVSVLLTGAYGFQSKKNDQQIFLFRPDSDYVAGYHVDGWVNKLDRRLSEISEFCQPATFILPFVEMPTDITKQHQVLLTISYDPKSSYFKGKEILTQSIEKAIKSTDFTLGKFTRAAYGNCGSYTFRTIKEVISSSAQG-------------------TTSNSYLTSVQDIESCIKYR-NL---------GVVDIESALTEFIVALEDYGKLQYSKTAKLTAVELLIGILNDIKESQYDKLVKEVDCLMDSSLGKLVQFHLKNLGAESLQKLVLPCVKFD--- | |||||||||||||
4 | 1ciiA2 | 0.14 | 0.08 | 2.76 | 0.97 | FFAS-3D | --------LAVLDAQQARLLGQQTRNDRAISEARNKLSSVTES---------------------------------------------------------------------------------------LNTARNALTRAEQQLTQQKNTPDGKVSPEKFPGTTSAVIDNRANLNYLLSHSGLDYKRNI----------------------------------------LNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQ--RLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQ----- | |||||||||||||
5 | 6gmhQ | 0.13 | 0.11 | 3.73 | 0.67 | HHpred | --YVDCYLR-------LGAMARDKGNFYEASDWFKEALQINQDHWSLIGNLHLAKQE------WGPGQKKFE-------------RILKQSTQSDTYSMLALWHQPTRDR---------------------EKEKRHQD---RALAIYKQVLRNAAHKGYFREARDVFAQVREATADI--SDVISAVQMYENCLRKFYKHQLFKCGKLQECQLKARHVAPSDTVLMFNVALKD-EKSNLKEVLNAVKELELAHRYFSYLSKLALAATEARQCSDLLSQAQYHVARARKQDEEERELRKQEQEKELLRQKL-----LKEQEEKKKLLEQRAQ-- | |||||||||||||
6 | 3t34A | 0.10 | 0.09 | 3.20 | 0.74 | MUSTER | ------------------------------ENLISLVNKIQRA-CTALGDHGDSSALDSLPAIAVVGGQSKDFLPRGSGIVTRRPLVLQLQKIAAVRKEIQDETAISSVPIHLSIYSPN--VVNLTLIDLTKVAVDGQSSIVKDIENMVRSYIEKPNC------LAISPANQDLATS----DAIKISREVDPSGTFGVLTDLMDKGTDAVEILEGRSFKLKYPWVGVV-------NRSQADINKNVDMIAARKREREYFSNTTEYRHLANKSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETE--MERRSAISKRLELYRAAQSEIDA | |||||||||||||
7 | 1zumA | 0.08 | 0.06 | 2.29 | 0.77 | CNFpred | --DRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKY---------------GKTIPID--GDFFSYTR----HEPVGVCGQIIPWNFPLLMQAWKLG-------PALAT----GNVVVMKVAEQTPLTAL-----YVANLI-------KEAGFPPGVVNIVPGF-------GPTAGAAIASHE-DVDKVAFTGSTEIGRV------RVTLE--LGGKSPNIIMSDA-----DMDWAVEQAHFALFFNQGQCC---CAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQ------------PQVDETQFKKILGYINTGK | |||||||||||||
8 | 6gmhQ | 0.14 | 0.11 | 3.92 | 0.93 | HHsearch-2 | KLYKNILREHVDCYLRLGAMARDKGNFYEASDWFKEALQI---N-------QDHP-----DAWSLIGNLHKQEWGPGQKKFE---RILKQSTQSDTYSMLAGLHQPTRDR------------------------EKEKRHQDRALAIYKQVLR--NDAKNLYNGIAVLAEARDVFAQVREKQYISAVQMYENCLRKFY--KH-QNTEVVLYRALFRHVAPSDTVLMFNVVLKDE-KSNLKEVLNAVKELELAHRYFSYLSKLALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKLLRQK-----LLKEQEEKRLREKEVEKTK | |||||||||||||
9 | 3tnfB | 0.08 | 0.08 | 3.07 | 0.95 | Neff-PPAS | -KTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNE---------KGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINPKENEEATKLLHKHNGLNLKLARKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK---- | |||||||||||||
10 | 6gmhQ | 0.13 | 0.11 | 3.74 | 1.06 | HHsearch | N-YVDCYLLGAMARPDAWSLIGNL---HLAQEWGPGQ-----KKFERILKQPS------------TQSDTYSMLALGNVWLQTLHQDREKEKRHNLYAAIRDVFAATADISDVWLNLA------HI--YVEQKQYISAVQMYECLRKFYKHQNRALKCGK-------LQECKQTLLKARHPNVALVLQRLATSVL--K-DEKSNLKEVLNA---VKELELAHRYF--S-YLSKLAL-AATEARQCSDLLSQAQYHVARARKQ--DEE--ER--ELRAKQ--EQEKELLRQKLLKEQEEKRLREKEEQKKL-----LEQRAQYVEKTKNILMF- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |