Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MYQWKENRKTGTKTGADGKKKKKTTYSYEKVWSSARQDSAGFKKRAGHENPAAFPYESRTVTAKNVTAGAFDLPESWVSGMGGWKKMSAADLKQAMPKGAPDGLILTDEGIFIGKDPKNLKIGDIRIRYEKVAPGPVTIIAAQKGKSFVPYQMKQGEIKEFRTGSMTADQVLGEARKSNAAMGWVLRLAGFLAMFIGLAMMFKPISVVLDVIPFLGNLAGKGATLISFLLAAGFALFTIAIAWFFYRP |
1 | 5cqcA1 | 0.11 | 0.08 | 2.93 | 0.72 | SPARKS-K | | -------------------------SIYPPEWVNKGMNSSRFDKSSAFYDDVSVLLTGYGFQSNDQQIFLFRPDSDYVAHVDAKSDAWVNDKLDRFCSKATQPATFILPFVEMPTDITKGVQHQVLLTISYDPKSTPTVYDSIGRDT--------------YSESLTCDEILTQSIEKANCGSYTFRTIKEVISSSAQYLTSQHVQDIESCIKYIESALTEGKTLP---------------------- |
2 | 2bg9E | 0.08 | 0.08 | 2.99 | 0.73 | FFAS-3D | | VTLKLTLTNLISLNEK--EEALTTNVWIEIQWNDYRLS----WNTSEYEGIDLVRIPSELLWLPDVVL-------------ENNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHRPAKKNYNWYIINIIAPCVLISSLVVLVYFLCTLSISVLLAQLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVS- |
3 | 3syaA | 0.16 | 0.06 | 2.15 | 0.29 | HHpred | | ----------------------------------------------------------------------------------------------------------------------------------------------------QRYVRKDGKCNVHHGNVRETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYTPCVTGPEGIILLLIQSVLGSIVNAFMVGCMFVKIQP |
4 | 4nuyA2 | 0.10 | 0.09 | 3.25 | 0.69 | MUSTER | | -------EKTMMVNLAEGA--TVIGGSADPVNARKVFD--GQLGSETDNISLGWDSKQSIIFKEDGLIKHWRFNDSARNPETTNQIFNIKDYNLDNLLENPNKFDDEKYWITVDTSAQGERATAFSNTLNNITSKYWRVVFDTKGDR--YSSPVVPELQILGYPLPNADTIMKTVTTAKELSQ--------QKMLDELKIKEMALETSLNSKIFDVTAINANAGVLKDCIEK---------------- |
5 | 5oqtA | 0.07 | 0.02 | 0.98 | 0.76 | CNFpred | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGVASSAVAVGWSG |
6 | 3syaA | 0.15 | 0.06 | 2.04 | 0.55 | HHsearch-2 | | ------------------------------------------------------------------------------------------------------------------------------------------------IQRY---VRKDGKCNVHHGNVRETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYTPCVTAPEGIILLLIQSVLGSIVNAFMVGCMFVKIQP |
7 | 6j38A | 0.12 | 0.12 | 4.16 | 0.79 | Neff-PPAS | | YPSFVKELEAVSGTSAGYRRDGVLDAAFDDESLAALDGLRNFLAPLGVAVAPAESVRGGLLGPDDGAVNPRELTAALLAAIDVRGTLIRRRATEFLADERTPGVLLENGCAVHGDRGAVPEIAPAKGQILRLRSLRRATRAVTRGSGVYLVPRTDGELVVGATYETVTAGGVAELLGKVLAVLPGAAELELAETAAGLRPGSPDGLPVLGWTAVPNLLVATGHSRIGVQLAPITADVMGEMLVTGRTP |
8 | 1sqqK | 0.22 | 0.05 | 1.52 | 0.33 | HHsearch | | ----------------------------------------------------------------------------------------------------------------------------------------------------------------MLTRF------LG-PRYRQLARNWVPTASLWGAVGAVGLVWATDWRLILDWVPYINGKFKK--------------------------- |
9 | 6hckA | 0.08 | 0.05 | 1.94 | 0.76 | SP3 | | ------------------------------------------------------------------------------------MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCGITKLTSIS-ENGTIMNLQYYKGAFVIMSGFIDTEQATAYV--IKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELI----AHSS |
10 | 3vpzA | 0.07 | 0.06 | 2.53 | 0.80 | PROSPECTOR2 | | QFDPIRFALITAFDAAKNEFVIEYNHTFPSADFGSLQNARHYLSTVPHIKPVRAPIKAGQVHLTNL---GWHFSVSEFKQAFSFLQLELDSNQ---------------NVVIKAGQADENSN-----IAVMGPGTGFGAACLVRTAQ--SSAVLSSEGGHISLAAVTDLDAKLLIELRKEHGPGIAHLYKAMAAVNGITAKHLDAAQISNLAEVCDATLNQFCDWLGSAAGDLALAYLIGAAACLHNS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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