Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | SMEDLVNDFDEKLTVCFRNYNTATEGIAPVKPITEENIMKDDEIWNALTDNYGNVMPVDWKTSHTRALHLPTLNLTEKGGIDNLNLDLSDDEELREQLDMHSIIVSCINDEPLFTAEQVIEEIEEMMQESPDPEDDETPTQSDRLSILSQEIQTLKQSSTNSSYEERVKRLSVAELNELLEEIETAIKDYSEELIQQLALRDELEFEKEVKNSFISVLIEVQNKQKEHREMVKKKKKMKN |
1 | 2pffB | 0.16 | 0.16 | 5.24 | 1.06 | HHsearch-2 | | VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLENDTTLVKELIKNYI-TARIMAKRPFDKKSNSALFRAVGEGNALVAIFGNTDFEELRDLYQTYHVLV---GDLIKFSAETLSELIRTTLDAENILEWLENPSNTPDKDYLLSIPISCPLIIQLAHYVAKLLGFTPGELRSYLKGAT----GHSQGLVTAVAIAETDSWEKAITVLFFIGVRCYEAYPLEDSLENNE-GVPSP |
2 | 5nnvA | 0.08 | 0.07 | 2.96 | 1.13 | Neff-PPAS | | AESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEA-IVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQ-----LSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSES-----SSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL----- |
3 | 4uosA | 0.20 | 0.12 | 4.01 | 0.77 | SPARKS-K | | ----------------------------------------------------------------------------------------GDNEEVKKMLEKMIEEIKKMLEKAIEMLEKMIKEIKKMLENGEDSEKKKAKEMAEKLKMVIELAEKILKKAKEMAILKKVKELGIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLELKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKV |
4 | 5tpmA | 0.11 | 0.07 | 2.40 | 0.92 | FFAS-3D | | --------------------------------------------------------------------------------------SNADLLETRHALEGIYYAALRSTDEDKERIRELHHAIELAQQSGD---------LDAESNAVLQYQIAVTEAAHNVVLLHLLRCEPLAQNVRQNFELLPLVSSH-RTRIFEAIAGKPEEAREASHRHLAFIEEILLDRSREESRRERSLRRLE- |
5 | 4hpqC | 0.14 | 0.11 | 3.85 | 0.32 | HHpred | | ---------------------LLREGIGRNESQVLVRLVNDMNEITKMMNKLDNITNE-IDQQ-------HNSKLGDF-----I--SRDSSHILDSKLNEIPTITRQFSEEFTNEADQLEQELADFLKSRSVSPED--AQNRDAAIVVNMLLDERDAKMQATL-SKLLTE--LRKHEEYISVFEGLIQKFKASCLEDIRQTRNLDFYANFERSYHNLLKEVKR-RKETAAKLSQILK--- |
6 | 5nnvA | 0.10 | 0.09 | 3.39 | 0.92 | MUSTER | | AESSAISAKEAKIEDTRDKIQALDESVDEL----QQVLLVTSEELEKLEG-----------RKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAE-VKQLRAQVKEKQQLSNELTELKIAAA-KKEQACKGEEDNLARLKKELTE--TELALKEA-KEDLSFLTSESTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTT |
7 | 2p8qA | 0.13 | 0.10 | 3.34 | 0.63 | CNFpred | | AVQKTTLVIMERLQQVLQMES---------HIQSTSDRIQFNDLQSLLCATLQNVLRKV-----------------------------QHQDALQISDVVMASLLRMFQ-GVQEDALMAVSTLVEVLGGEFLKYMEA-------KPFLGIGLKN---------AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNNVHRSVKPQILSVFGDIALAIGGEF-----KKYLEV |
8 | 1vt4I | 0.18 | 0.17 | 5.70 | 0.40 | HHsearch-2 | | SPET-VLEMLQKLLQIDPNWTSRSDHSSNIKL----RIHSIQAELRRLLKSKPYENLLNVQNNLSCKI-LLTTRFKQVTDTDHHSMTLTPDEVKPQDLPREVLTTSIIARDGLATWDNWIESSLNVLDRSVFPPSAHIPTILLFDVIKSDVLHKYSSTISPSIYELKVKLENEYALHRIVDHYNIPKTFDSDDLIDQYFYSHIGHHLKNIEHPERMTLFMVFLDFRFLEQKIRHDSTAWN |
9 | 4tqlA | 0.12 | 0.11 | 3.98 | 0.98 | Neff-PPAS | | -YKQMVQELEKARDRMEKLYKEMVELIQKAIELMRKIFQEVKQEVEKAIEEMKKLYDEAKKKIEQMIQQIKQGG--------DKQKMEELLKRAKEEMKKVKDKMEKLLEKLKQIMQEAKQKMEKLLKQLKEEMKKMKEKMEKLLKEMKQRMEEVKKKMDDELLEKIKKNILKKIAEDLIKKAEENIKEAKKIAEQLVKRKQLIEKAKQVAEELIKKILQLIEKAKEIAEKVLKG----- |
10 | 1na6B2 | 0.18 | 0.07 | 2.30 | 0.46 | HHsearch | | ---------------------------------------------------------------------------------------------------------------------------------YILPEDW-H----LRFPS-GSEIIQYAAHYVNSLDPD-------EQLLDRRRVEYDIFLLVEELHVLDI-IRK--GFG--SVDEFIALANSVSNRRKSRAGKHLIEHGLR- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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