Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | VVERNKFQDTYVILKDKYAKQLVDNWVEKTDPGKHVFEDLAIAAFLIELWKQTYSSNKEFSFVDVGCGNGLLVYLLLMEGYNGYGFDARKRKSWETYPLWVQVKLYEKVLVP |
1 | 3gdhA1 | 0.10 | 0.10 | 3.61 | 1.29 | SPARKS-K | | IAAVPELAKYWAQ-----RYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIKIEFICG |
2 | 3gdhA1 | 0.13 | 0.12 | 4.32 | 1.16 | FFAS-3D | | -LPPEIAAV--PELAKYWAQRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKI--- |
3 | 4pneA | 0.13 | 0.12 | 4.33 | 1.27 | HHpred | | APTSQQVGQMYDLVTPLLNSVAGGYWENDGR---ASWQQA--ADRLTDLVAERTVLDGGVRLLDVGCGTGQPALRVARNAIQITGITVSQVQVAIAADCARERGLSHRVDFS |
4 | 4qdjA | 0.16 | 0.15 | 5.07 | 1.18 | MUSTER | | LDDKTIVRDYFNS---TGFDRWRRIYGQVNFVQKDIRVGHQQTVDSVVAWLVADGNLPGLLVCDAGCGVGSLSIPLAQAGALVYGSDISEKMVGEAQQKAQEVLAYGNQPTF |
5 | 4azsA1 | 0.12 | 0.11 | 3.81 | 1.47 | Neff-PPAS | | -----DLNTLVSELPEIYQTIFHPEWDGDAARD----CNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRV |
6 | 4azsA1 | 0.13 | 0.12 | 4.05 | 1.14 | SPARKS-K | | -----DLNTLVSELPEIYQTIFHPEWDGDAARDCN--QRLDLITEQYDNLSRALG--RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRV |
7 | 3e8sA | 0.13 | 0.10 | 3.41 | 1.16 | FFAS-3D | | --PEDALLDSWHQNAQAWIDAVRHG------------AIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLV-----DAARAA-------- |
8 | 3hemA | 0.13 | 0.12 | 4.36 | 1.37 | HHpred | | -PPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYARKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEDVNVIGLTLSENQYAHDKAMFDEVDSPRRKRI- |
9 | 3gdhA | 0.14 | 0.13 | 4.57 | 1.08 | MUSTER | | IAAVPELAKYWAQRYRLFSR--FDDGIKLDREGWFSVTPEKIAEHIAGRVSQSF---KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFI |
10 | 3gdhA1 | 0.11 | 0.10 | 3.57 | 1.36 | Neff-PPAS | | ----PELAKYWAQRYRLF-----SRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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