Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | KPVGGLLLLIGLFIAALVYFFEKQHKSRLPKNKSLMLFSLITAIVLIVMEVISLFQELEISHIGYLVPIAMGVMLIKLLINERLAILASMILSICGSMMFNQGVTGTFNYEIATYFLISSIAGILFLGKYNRRSKILQAGLFVSFVNIVVMFTLQLIQNTAQSGLEMGTYLIMGAVSGIGSSVLVLGLMPFFESGFGILS |
1 | 5x3xM | 0.08 | 0.07 | 2.75 | 1.22 | SPARKS-K | | --------------------MHIMEGYLPVTHAIGWSLAAAPFVVAGALKIRKIVAEMTLAAAGAFAFVLTGTGLGAVVFGPSVMAVLGVIVLLFQALLLAHGGLTTLGANAFSMAIVGPWVAFGVYKLAGKAVAVFLAAFLGDLATYVTTSLQLALAYPKFGSVFALTQIPLAIAEGFLTVIVVDALAGK--------- |
2 | 4jq6A | 0.10 | 0.09 | 3.35 | 1.37 | FFAS-3D | | --YVGISFWLAAAIMLASTVFFFVERSDVPVKWKTSLTVAGLVTGVAFWHYLYMRGVWIFRYIDWLITVPLQIIEFYLIIAVFWKLLIASLVMLIGGFI--GEAGLGDVVVWWIVGMIAWLYIIYEIFLFNTIKWIVT------VGWAIYPIGYAWGYFGDGLNEDA-LNIVYNLADLINKAAFGLAIWAAAMK------ |
3 | 3rkoB | 0.10 | 0.10 | 3.48 | 1.19 | CNFpred | | TRVGDVFLAFALFILLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLP------LQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTP--EVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQ----------AWDAAIFHLMTHAFFKALLFLASGSVILACHHEQN |
4 | 5kbwA | 0.12 | 0.10 | 3.35 | 1.14 | HHsearch-2 | | -----------------------------SSIKKISFVGIFSALATLVMF----LEFPIFPQASFYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSG------DPVIAMNAVLGMGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNLYFEAPFELKFFPFILAFNLVKFGIDSVVTFFVYKKVSSIL---- |
5 | 5kbwA | 0.08 | 0.07 | 2.73 | 1.10 | Neff-PPAS | | -----------------------------SSIKKISFVGIFSALATLVMFLE--FPIFPQASFLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSG--DPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVFEAPFELYLKFFPFILAFNLVKFGIDSVVTFFVYKKVSSIL |
6 | 5kbwA | 0.10 | 0.08 | 2.99 | 1.19 | SPARKS-K | | -----------------------------SSIKKISFVGIFSALATLVMFLEPIFPQASFLKYDPS---EIPALIVSFLLGPGVGMFVVLVKDILFFLMK-SGDPVGIAMNAVLGMSFVGIAGLIYHSRATAIKGMIVATLFATAFALGLNALIVPLYFE-APFELYLKFFPFILAFNLVKFGIDSVVTFFVYKKVSSIL |
7 | 1h2sA | 0.09 | 0.09 | 3.27 | 1.34 | FFAS-3D | | -GLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVGWPRYIDWILTTPLIVYFLGLLAGREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFLGLVYYLVGPGIKSLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATL----- |
8 | 3rkoC | 0.11 | 0.10 | 3.62 | 1.17 | CNFpred | | TQASGLVMLIAILALVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPLH--GWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEF------APIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGS--------QLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRD |
9 | 3p5nA | 0.10 | 0.08 | 2.96 | 1.09 | HHsearch-2 | | -----------------------------QQNKRLITISMLSAIAFVLTF----IKFPIPFLPLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFSMGD-----PVGPFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLKVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLKR-- |
10 | 4rfsS | 0.13 | 0.11 | 3.81 | 1.07 | Neff-PPAS | | -----------------------------HKTFRLVVDALLMAIVLLQNLVPFLGYIPFGPF--SMTLIGLTVIVAGSALGPRDGLLIGGFWGLITFVRAFTWPSSTNPLISILPRLLMGLVAGSLYLWGRHRQWSMRQAMQVAAGCAALTNTVLVLGLVFLGYVLMISLFTNGIPELILDVLVAPLIAMPLRRQWERLK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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