Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | VSIDPTKEGLQKMQQFLVNISGRVQPGDANNIVAGLKENLGLQNVTVRGISSKTHFAQVMVEADYRMKLIGIGIEQPPVKIVSY |
1 | 5cwnA1 | 0.15 | 0.14 | 4.82 | 0.78 | SPARKS-K | | --MDP-EEILERAKESLERAREASERGDEEEFRKAAEKALELAKRLVEQAEGDPELVLEAAKVALRVAELAAKNGDKEVFKKAA |
2 | 5uf5A2 | 0.10 | 0.07 | 2.63 | 0.54 | FFAS-3D | | -------NQLNQLTDYLKNAAPTPKNNFLRAMTSVLQMQIAQY-----GITEDNEGINQLFKLGLHLLAMA------------- |
3 | 5ugqA | 0.18 | 0.17 | 5.40 | 0.28 | HHpred | | -QVDYSREGVAHIENETKQFVGHVGTVNVAKDLDAIRAALGDDKLTYLGYSYGTRIGSAYAEE-FRVRAI---LDGAVDPN--- |
4 | 5eqzA2 | 0.13 | 0.11 | 3.69 | 0.82 | MUSTER | | -------AALKAAKNTIENITDKDQ-DISKRKIWSEAKLVGV-TVPLLGSNTSGNGDKMSKNAVEQIDKVIKFLEE-------- |
5 | 3g68A | 0.15 | 0.11 | 3.61 | 0.53 | CNFpred | | -------EEINKILDAINRFEAVYK--LSKQWIERNKEKLVSKEIRIIGHS---DIYGDTLEAALKLLETMR------------ |
6 | 2csbA | 0.23 | 0.21 | 6.71 | 0.48 | HHsearch-2 | | CSIDPTEDRYQNFDERVQRLSTGGSPARYAIVRRAIAKALDIPAIEVRAVKRNP-----LQPALYRI-LVRYGRVDLPVTVPPF |
7 | 5eqzA2 | 0.15 | 0.12 | 4.01 | 0.68 | Neff-PPAS | | -------AALKAAKNTIENITDKDQDISKRKIWSEAKLVGV--TVPLLGSNTSGNGDKMSKNAVEQIDKVIKFLEE-------- |
8 | 4qiwK | 0.16 | 0.06 | 1.99 | 0.27 | HHsearch | | --------------------------------------------------FRYTRFEKARIIG-ARALQIAMGAPVLIDVEIT- |
9 | 4nimA | 0.16 | 0.15 | 5.15 | 0.66 | SP3 | | CGRS--AEKGRAQAAGLEELGAKANVEDCRRIVAEADRAFGRLDILVNGLTDRGTPFFLIQEAIKLFRRDRMSSMGGQPFIAAY |
10 | 2kpoA | 0.13 | 0.13 | 4.54 | 0.44 | PROSPECTOR2 | | MLISNDKKLIEEARKMAEKANLERTVKTEDELKKYLEEFRKEQNIKVLILVSNDEELDKAKEAKRWIKEFSEEGGSLEHHHHHH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|