Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | MDILLFDSNQKIQSTLIENAVGTDSLLVPNVYWDRLNLKEKKALRGKLPFLLRKYSKQIASMKRLHNRAGKIKYNRSVGKMKKLSIRVHTGVWATLGVLAAAHGVSRCYLFNYMLWLEDLGVGDSTVETLNRGVPSFHWTYKMIWKINRRQNLISRELEFEPNPMT |
1 | 4dt1A | 0.13 | 0.11 | 3.95 | 0.67 | SPARKS-K | | LITIWPSPTKNIKQNLSKEHVVTQLFFIPSQFQKLVPLPENVRIYEELSAITVKLLQILSMNKINAQREP-----------LKIILYING--LEVMFRNSQFKSRSHELLRDTLLKLRVMGNDE-----------NENASIRTLLEFPKEQLLDYYLKKNRIKNGD |
2 | 4ftfA | 0.17 | 0.10 | 3.17 | 0.51 | FFAS-3D | | --------------------------------------------QRNLELLAGNRASLLSTELPLEFGPLNILRATAKGSTVELMMVYNTDANNATEQVLQSAVSSFCA-------------NKDIRSNLDVGI-----SYRIQMR-NTRGQLMADQL-------- |
3 | 2k5jA | 0.15 | 0.06 | 2.02 | 0.25 | HHpred | | ------------MNSLAGIDMGRILLDLSNEVIKQLDVQRNLPRADLLREAVDQYLINQSQ-TARTSVPGIWEYQRKLR--------------------------------------------------------------------------------------- |
4 | 5cw9A | 0.18 | 0.14 | 4.73 | 0.67 | MUSTER | | MDIRFRGDDPEYYKALREKFAGTVTVTL----IIRFRGDDLEALEKALKEMIRQARKF----------AGTVTYTLDGNDLEIRITGVPPQVILELVKEAIRLAKEFNITVTVELVIRITGVPEQVRKELAKEAERLAKEF---------NITVTYTIRL------ |
5 | 4uy5A | 0.11 | 0.07 | 2.60 | 0.68 | CNFpred | | -----------------------RLVVFLGSTIGNLT-------PAPRAEFLSTLADTLQ-----------------PGDSLLLGTDLVK-DTGRLVRAYDDAGVTAAFNRNVLAVVNREL-----------SADFDLDAFEHVAKWNSDEERIEMWLRARTAQHV |
6 | 1ea4F | 0.22 | 0.06 | 1.90 | 0.67 | HHsearch-2 | | -------------------------------------------------------------------------------MKKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQEK------------------------------------------ |
7 | 5cw9A | 0.15 | 0.12 | 4.07 | 0.70 | Neff-PPAS | | PEAYYKALREMIRQARKFAGTVTVTLIIRFRG------DDLEALEKALKEMIRQARKF----------AGTVTYTLDGNDLEIRITGVPPQVILELVKEAIRLAKEFNITVTVELVIRITGVPEQVRKELAKEAERLAKEFNITVTYTIRL--------------- |
8 | 2cpgB | 0.22 | 0.06 | 1.90 | 0.62 | HHsearch | | -------------------------------------------------------------------------------MKKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQER------------------------------------------ |
9 | 1dfjI3 | 0.17 | 0.15 | 4.95 | 0.68 | SP3 | | ---LHLSDNPLLCEGLLDPQCHLEKLQL---EYCRLTAASCEPLASVLRATVSNNDIGEAGARVLGQGLAD-----SACQLETLRLENCGLTPANCKDLCGIVASQAS-----LLDLGSNGLGDAGIAELCPGLLSPASRLK---TLWLWECDITASLQAKET-LK |
10 | 2mraA | 0.11 | 0.08 | 2.80 | 0.56 | PROSPECTOR2 | | MA----GKELRVEIKIDCGNDDKETTY-------DLYFSKAEEAKELLKKVAEKAADKIKK---------------QGCKRVKIRFEKKGLDDDARKKAKKW----ALEVANKIA--NELGAKQS--------------------TTTTDGDTFEVEVILELEHHH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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