Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | THVIKLQVALRGNAAVKSLQKDLNKIAERTDDSNERWYKFILTETISSLRCHKDCCISTSLTVDVKYSIDWKDHFEKISMEERSKFDEETLSNLQGIKRKKVYSKKTDGSKNEYIVLTILVAANGILDFPQVIRSVADLETALAKLNSTPETDLWGMHVLWAPQDEDDILSAERIQKDYPYQKP |
1 | 3rpeA | 0.12 | 0.11 | 3.85 | 0.67 | SPARKS-K | | SNVLIINAMKSKGALNLTLTNVAADFLRESGHQVDQGYDI--ESEIENYLWA-DTIIYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKT-----YMLSVTWNAPQFFGVGVDGVLPFHKANQFLGMKPLPTF----MCNDVIKQPDI---EGDIARYRQHLA |
2 | 2ehjA | 0.10 | 0.09 | 3.18 | 0.70 | FFAS-3D | | ------KIVEVKHPLVKHKLGLMRE-----QDISTKRFRELASEVGSLLTYEATADLEGPVEIDQIKGKKITRAGLGMMDGVLENVPSARIRNEETLEPVPYFQKLVSNIDERMALIVDPMLATG-----------GSVIATIDLLKKAGCSSIKVLVLVAAPE------GIAALEKAHPDV-- |
3 | 5irdA | 0.14 | 0.08 | 2.78 | 0.26 | HHpred | | --------------------------------------------------------------ETSAPAE---ELLADVEEAMRDVVDPELGINVVGLVYGLD--V-QDGDEGTVALIDMTLTSAACP-LTDVI--EDQSRSALVGSGL---VDDIRINWVWNPPWGPDKITEDGREQ-LRAL-- |
4 | 4qlaA | 0.11 | 0.10 | 3.73 | 0.62 | MUSTER | | KEIIGFHSALTLSPAATFLEFVGALFPSLIVEPELANRLYPLSEKYSTLLEELGY-----MHIQATKPDTVGIGLTDSPAGLLAYILEKFSTWTNPDLRSKEDGGLSYRWTKDQLIDNLMLYWSTKS-IVTSMRLYAESFSSRHFDLKLDEIQVQVTWVLQ----KHELAYPCILKMKYPKLVN |
5 | 1gqnA | 0.14 | 0.10 | 3.53 | 0.63 | CNFpred | | FDILEWRVDHFMIASTQSVLTAARVIRDAMPDITTQHYLTLNRAAIDSG-----LVDMIDLELF-----TGDADVKATVDYAHAH--------------------------NVYVVMSNHDFH--------QTPSAEEMVSRLRKMQAL---GADIPKIAVMPQSKHDVLTLLTATLEMQQHYA |
6 | 4griA3 | 0.13 | 0.04 | 1.52 | 0.39 | HHsearch-2 | | -----------------------------------------------------------------------------------------MVMGNDGQKLSK-----RHG--S----TAL-RQFI-E-----DGYLPEAIINYVTLLG-------------WSYDDKREFFSKNDLEQFFS-IEK |
7 | 4i1uA | 0.13 | 0.13 | 4.49 | 0.60 | Neff-PPAS | | TTVADLFAARGASLVD------TDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRRLEAITHPLIRAETEREARDAQGPVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIARQATREARLAAADDVIVNDAATPDALAVDALHQRYLAFAA |
8 | 4griA3 | 0.15 | 0.05 | 1.66 | 0.56 | HHsearch | | -----------------------------------------------------------------------------------------MVMGNDGQKLSK-----RHGS------TA--LRQFIE-----DGYLPEAIINYVTLLG-------------WSYDDKREFFSKNDLEQFFS-IE- |
9 | 5h7cA2 | 0.11 | 0.08 | 2.77 | 0.62 | SP3 | | -------------TDKEEVIEIVKELAELAKSTDSELVNEIVKQLAEVAKEATDVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIV--------KQLEEVAKEATDKELVEHIEKILEELKKQS------------------------------- |
10 | 1wdhA | 0.08 | 0.08 | 3.04 | 0.67 | PROSPECTOR2 | | LSVPATPIAFVKDILFPYIEENVKEYLQTHWEE--EECQQDVSLLRKQAEEDAHLDGAVPIPAASGNGVDDLQQIQAVNVCWQSLDKTTALKQLQGHWRAAFTAGRKAEFAGKVYIYSLLFGHSTEGDILELVDESESYRKIADSI-GCSTNNILFLHVAVVVRPGNAGLTDDEKTYYSSELYL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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