Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MGPFRVDQFPDNYPAFLAVSTSCFLRYNKWCILGIHQEIEALTLEEGEVFLQFQKEVKKLLRLKVNFQRKCSLYEKIYKKYVYNVPEKKGESSKCVAEEEEDYYEFEEIPMEETCDKKQDSEVKDV |
1 | 1ls4A | 0.12 | 0.11 | 3.95 | 0.61 | SPARKS-K | | LHETLGLPTPDEALNLLTEQANAFKTKIAEVTTSLKQEAEKHQGSVAEQLNAFARNLNNSIHDAATLQSALTNVGHQWQDIATKTQASAQEAWAPQSALQEAAEKTKEASIQSAVQKPAN------ |
2 | 1cmzA | 0.20 | 0.13 | 4.08 | 0.51 | FFAS-3D | | --PSEVQSWAQSFDKLMPAGRSVFRAF--------------LRTEYSEENMLFWLACEELKAEANQ-HVVDEKARLIYEDYVSILSPKEVSLDSRVREG--------------------------- |
3 | 4s3kA | 0.18 | 0.15 | 4.92 | 0.29 | HHpred | | -ANIENGAFSDVGRAILNLLNNIVKTAKEQNFRDIHFDFEFLRPADKEAYIAFLQKAKKRLQDEMSVALEAHDYKAIGETGGPPMA-----VSPIGPVRDV-LEYASEIPSSKI------------ |
4 | 3b98A | 0.16 | 0.15 | 5.04 | 0.75 | MUSTER | | MTPSEMGLKTSEWKKLFNLCYSLLFKTGYLTVFGAENNNSAALTQIYEEFRRFDKLLPKLARTTVNEKQIASAAREKLWKWLTPSGLDRKPREQSWLGSYVKQLQDEGIDAEMQRR----AMLLQL |
5 | 5ujaA | 0.11 | 0.06 | 2.02 | 0.53 | CNFpred | | -------------VRLECVGNCIVLFASLFAVISRH----SLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLK-------------------------------------------- |
6 | 4bz5A | 0.14 | 0.09 | 2.97 | 0.42 | HHsearch-2 | | GGGYNF----PDTARLWTRVTALTIEEVKMTISPEIPEHSYLDIDYPDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLY--------------------------------------------- |
7 | 1w9rA | 0.09 | 0.09 | 3.29 | 0.77 | Neff-PPAS | | -GSHMPEKKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTKTLELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKP------- |
8 | 3aquA1 | 0.13 | 0.08 | 2.75 | 0.26 | HHsearch | | RNPLSIGGGKTAYASMASFIDSSIRVARSYGFHGLDLDWEPSSATEMTNFGTLLREWRSAVVAEASSSGKPRLLL----------A---------------------------------------- |
9 | 1gqeA1 | 0.10 | 0.09 | 3.24 | 0.59 | SP3 | | -----INPVNNRIQDLTERSDVLRGYLD---YDAKKERLEEVNELEQPDVWNEPERAQALGKE---RSSLEAVVDTLDQKQG----LEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFR |
10 | 1w9rA | 0.08 | 0.08 | 3.09 | 0.51 | PROSPECTOR2 | | GSHMPEKKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKP------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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