Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | MGNNRLNNLKGRAVLYRIAGLLRWLIWGVKYAVIWPLATTAIVVILLFRTGDTTPGQQMAQEIGRVRAMAPSGMFPVRDCPDPAFTVSSPVPLNLTENCPLKITGAEEYAADIDQSLSQTGWLLWGMLALLYTAVAVMIGDRPYRHNPLTYVYDTATNNLKYIDKENEIRTLKVNTNGQVSYSGNKEAKKEGDKNEHT |
1 | 3rm5A2 | 0.06 | 0.06 | 2.43 | 0.65 | SPARKS-K | | LINHPKVKPHWDSYIHEFVKKVAKFQFFIEQDYAYLVDYARVHCIAGSKAPCLEDMEKELVIVGGVRTEMGQHEKRLKEVFGVKDPDYFQKIKRGP--------ALRAYSRYFNDVSRRGWQELVASLTPCLMGYGEALTKMKGKVTAHEWCETYASSWYREAMDEGEKLLNHILETY-----PPEQLDTLVTIYAEV |
2 | 2l6xA | 0.11 | 0.07 | 2.57 | 0.73 | FFAS-3D | | ----SGLVTGIAFWHYMYMRGFRYIDW----LLTVPLLICEFYLILAAATNVAGSGSLVMLVFGYMGEAGIMAAWPA--FIIGCLAWVYMIYELWAGEGKSACNTASPAVQSAYNTMMYIIIFGWAIYPVGYLNLNLIYN---------------------------------------------------------- |
3 | 3mk7C | 0.13 | 0.11 | 3.84 | 0.33 | HHpred | | -------------------PLPRWWFLLFIGTLVFGILYLVLYPGLGNWKGGWTQEKQWEREVAQADEKYKMGAFACSICHGSDAKGSLGFP-NLADQDWRWGGDAASIKTSILNAAMPAIEGVKNVAAFVRKD---LAGLPLPEG------TDADLSAGKNVYATCAVCHGQGGEGMAALAPKLNSAGIYSSLG--- |
4 | 4uosA | 0.14 | 0.13 | 4.32 | 0.61 | MUSTER | | -GDNEEVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLEN----EDSKAKEMAEKILKMVIELAEK----LKKAKEMAEKILKKV-KELGVDNEEVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLENGEDSEKILKKAKEMA-EKILKMVIELAEKILKKAKEMAEKILKKVKELGVG------ |
5 | 5oqtA | 0.13 | 0.07 | 2.26 | 0.76 | CNFpred | | -----------DLTMLGIGAIIGTGIFVLTGVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTV---------------------------------PVSGSAYTYSYATFGELIAWILGWDLILEYGVASSAVAVGW--------------------------------------------------------- |
6 | 2pffB | 0.14 | 0.12 | 4.16 | 0.80 | HHsearch-2 | | WLENPSNTPDKDYLLSIISCPLIGVIWESFFVSVRKAITVLFFI-GVRCYPNTSLPPSILEDSLENNEGVPSPML---------------------SISNLTQEQVQDYVNKTNSHLPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSLPVASPFHSHLLVDLINKISERIVDCIIRLPVKWETTTQ-FKATHI |
7 | 5cwqA | 0.09 | 0.09 | 3.45 | 0.79 | Neff-PPAS | | -RESEEAERRLQEARKRSEEARERGDLKELAEALIEEARAVQELARVACERGNSKAQRVLEEARKVSEEARIALAVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEERHVQECRGGWLEHH |
8 | 2bg9B2 | 0.12 | 0.07 | 2.50 | 0.46 | HHsearch | | ----------------------------YIVYTIVPCILISILAILVFYLPPDAGEKMSLSKVPETSLSVPIISYL-MFIMILVAFSRSPTHEAV-EAIKYLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVP-PDNP--F----------------------A-------------------------- |
9 | 4at0A1 | 0.10 | 0.10 | 3.57 | 0.55 | SP3 | | GGGTPLQKACGDSPENMKTFMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDT----GRVVGIVAKQYGKEVAVRARRTGSFAYNDKMIEAHAPRLIGRPGAAIEEHDG |
10 | 1s8oA2 | 0.09 | 0.09 | 3.28 | 0.67 | PROSPECTOR2 | | APLPTSCNPSDEIEEYCMEVLCKEMVTFLDKMLVWYMALFPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIPHLK--RGHIED------CGDSDARN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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