Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | DDCDLPPRYDIKYYRISDKLKRKYQVTWDECPRMLIKPKKVCLRESIVPRPRCRRVRKEVSKASPCLTVNPMECKKEKKGAKCPRFTMPCCKPARMPPSCSRARSKSNCVKRNAPYPSFSECQKDALLGLPPTECRCLDAVSLCEAWAHLRR |
1 | 2nbiA2 | 0.16 | 0.11 | 3.51 | 1.94 | SPARKS-K | | -----------------QPSSQPTGPQPSSQPSECADVLELCPYDTCFLPFD----DSSRPPDCTDPSVNRPDCDKTAIDFTCPTCCPTQCRPDNPMFSPSPDGSPPVC--SPTMMPSPLPSPTE--------------------------- |
2 | 2nbiA | 0.15 | 0.14 | 4.86 | 1.33 | MUSTER | | QPSDLNPS------QPSECADVLEECPIDECPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECP-LDTCFLPTSDPARPPDCTAVGRPD-CDVLPFPNN |
3 | 5ml1A | 0.17 | 0.11 | 3.47 | 1.74 | Neff-PPAS | | --------------------------------SMSSVFGAGCTDVCKQTPCGCATSGCNCTDDCKCQSCKYGACTDTCKQTPCGCGSGCNCKEDCRCQSCST---ACKCAAGSCGCTGPDSCK-------CDRSCSCK-------------- |
4 | 3gavA | 0.13 | 0.12 | 4.32 | 1.58 | SPARKS-K | | QSCGPPPE--LLNGNVKEKTKEEYEVVEYYCNPLMKGPNKIQCVDGETLPIVEESTCGDIPEWAQLSSPPYYYCSESFTMIGHRSITCIH-GVWTQLPQCVAIDKLKKCKSSNLIIL-----EEHLKNKKEFDHYRCGWIHTVCINGRWDPE |
5 | 4nl6A | 0.13 | 0.12 | 4.08 | 0.48 | FFAS-3D | | ----VPEQEDSVLFRRGTGQSDD-SDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVDKCSAIWSEDGCSIDFKRETCV---VVYTGYGNREEQNLSDLLSPICEVANNIE---------- |
6 | 2zsiB | 0.14 | 0.02 | 0.68 | 0.27 | HHpred | | -----VLATETVHYNPAEL------YTWLDSML----------------------------------------------------------------------------------------------------------------------- |
7 | 2nbiA1 | 0.15 | 0.14 | 4.68 | 1.28 | MUSTER | | QPSDLNPS------QPSECADVLEECPIDECFLPYSDAPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECP-LDTCFLPTSDPARPPDCTAVGRPD-CDVLPFPNN |
8 | 4ogaE | 0.21 | 0.13 | 4.18 | 0.55 | CNFpred | | -----------------------------NCPATVIQFVERCWTHS------------HCQKVCPTIC-KSHGCTA--EGLCCHSECLGNCSQPDDPTKCV------ACRNFYLDGRCVETCPPPYYH---FQDWRCVN-FSFCQDLHH--- |
9 | 1bgkA | 0.24 | 0.03 | 0.82 | 0.48 | HHsearch-2 | | ---------------------------------------------------------------------------------------------------------------------------------------VCRDWFTACRHAKSLGN |
10 | 1hmcA | 0.10 | 0.10 | 3.61 | 1.61 | Neff-PPAS | | -YCSHMIGLQSLQRLIDSQMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLKSCFTKDY-----EEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSSQGH--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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