Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | GTIYGYIWYGGQLAQTPTIFLPFVPDSPTASLFFCLVLIAFLLGKNWPLMEALASVTLVKYGIWAVVMILAAAIAGDTLHWTQYMLICSHLGMAVQGLLYVPYYRIKAWHLIVVAVWTLHNDFIDYIYGMHPWVSSSIYQYIREIGYFTFWLSIFSLLI |
1 | 3rlbA | 0.10 | 0.09 | 3.24 | 1.30 | SPARKS-K | | ----------------------NVRLLTEIAFMAALAFIISLIPNTVEIACIPILLLSLRRGVGGLIWGILSMITGHSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYNGISGILTAIAAFVILIIFVKK |
2 | 4he8F | 0.12 | 0.12 | 4.23 | 1.04 | CNFpred | | LLFLGAVGKSAQIPLMVWLPDAMAGPTPVSALIHAATMVTAGVYLIARSSFLYSSYAIAVVGLLTAAYGALSAFGQTDIKKIVAYSTISQLGYMFLAAGVGAYWVHVFTHAFFKALLFLASGSVIHALGKMGGLWKHLPQTRWHALIGALALGGLPLLS |
3 | 5kbwA | 0.12 | 0.10 | 3.58 | 1.23 | SPARKS-K | | ---------------------SSIKKISFVGIFSALATLVMFLEFPIFPSEIPALIVSFLLGFVVLVKDILFFLMKSGDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNAVPAPFELYLKFFPFILAFNLVKFGIDSVV |
4 | 6btmC | 0.14 | 0.13 | 4.30 | 0.80 | FFAS-3D | | ------GWHTTIF---PPYFVA----GAVFSGFAMVNTLLIVMRKTLQHIELMNIIIMITGSIVGVAYITELFRATGPYWWAYWSMMT--CNVFSPQFMWFKKLRTSIMFSFIISIVVNIGMWFERFVIHRDYLPSSFVDIGIFIGTIGFFFVLFLLYS |
5 | 6ffvA | 0.13 | 0.11 | 3.70 | 0.26 | HHpred | | ----------------HWASIHSLPDASWAIFFLLG----VYVRALWVVPALIAASVVIDYVAITW-----GGVSDFCVSPAYWLLIPAYLALFAGGRFYARGHSLSLLGLVVAVAQLLTTGGFYFYSGRFADPT--LAGLVLMALYVGLAATVHVA-- |
6 | 6cc4A4 | 0.11 | 0.10 | 3.67 | 0.90 | MUSTER | | GSV-SWMYYADRLMEFPSGVLG-----ALGTILLPSLSKSFASGNHRLMDWGLRLCFLLALPSAVALGILSGPLTVQYGKFTAFDALMTQRALIAYSTPQPGWMAFLLRLVVAVLVMSGVLLGMLHIMPEW-SLGTMPWRLLRLMAVVLAGIAAYFAAL |
7 | 5xtcl | 0.09 | 0.09 | 3.55 | 1.01 | CNFpred | | GLLLAAAGKSAQLGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLAIQTLTLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMGGLTMPLTSTSLTIGSLALAGM |
8 | 4tq3A | 0.11 | 0.10 | 3.67 | 0.43 | HHsearch-2 | | -------SKYLRLLRPVCFLLPYANASLQHAVLGLLSFAFWMYNLSQPLFLALSLATAAAINEKMLGANIIGYVYSARFPVMDVICNALAAVLAYAGLS-IGGAEVPIAIYPAAFTFYIPTAVSDYKKAGLKNTPVFFGPALKSLYPLSAITVILWAYV |
9 | 3o7pA2 | 0.08 | 0.08 | 3.04 | 0.91 | Neff-PPAS | | WAVLAQFCYVGAQTACWSYLIRYAVEEGFAANYLTGTMVCFFIGRFTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF |
10 | 5by3A1 | 0.12 | 0.10 | 3.54 | 0.99 | HHsearch | | GTAYGILEISRLLGVSPWEWWADVTPEKKETFRLSGK--FRELQSPSDWGLPWSNK---TYEP---------SDVKGEIGPRTN-------ERIFELLLRLRA-NTYWPAHECPGNREAAK---KYGFGASP-ACNAAG-EWKIVYFWEVLDRVFVDL- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|