Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | NKEYSISNKENTHNGLRMSIYPKSTGNKGFEDGDDAISKLHDQEEYGAALIRNNMQHIMGPVTAIKLLGEENKENTPRNVLNIIPASMNYAKAHSKDKKKPQRDSQAQKSPVKSKSTHRIQHNIDYLKHLSKVKKIPSDFEGSGYTDLQERGDNDISPFS |
1 | 5wtjA1 | 0.17 | 0.17 | 5.54 | 0.93 | SPARKS-K | | QLNTLRNECITENWNLNLEEFIQKKEIEKDFDDFKIQTKKEIFNNYYEDIKNNILTEFKDINGCDVLEKKLEKIKFEIDKKSNILEQRKLSNINKKDKKKVDQYIKDKDQEIKSKILCRIIFNSDFLKKYKKIDNLIEDFQEIYYP---KERKNELYIYK |
2 | 4bmlA | 0.09 | 0.09 | 3.53 | 0.41 | FFAS-3D | | PGTPIVGDAGIKANEKTLVMDDLLVSSQFVYSLDEIFSQYSTRAEVSKQIGEALATHYDERIARVLAKASAEASPVTGFHVNIGAGNTNDAQAIVDGFFEAAAVLDERSAPQEGRVAVLSPRQYYSLISSVDTNILNREIGNSQGDMNSGKGLYSIAGIR |
3 | 2pffB | 0.22 | 0.21 | 6.49 | 0.32 | HHpred | | -ETDSWESFFVSVEALPPSILEDSLENNEGVSPMLSISNLT-QEQVQDYVNKTNHLPAGKQVEISLVNGAKNLVSGPPQSLYGLNLTLRKAKAPSGLDQSRERKLSNRFLPVASPFHSHLVPASDLINKDLKDIQIPVTFDGSDLRVLSG---------- |
4 | 2rigA | 0.16 | 0.11 | 3.76 | 0.77 | MUSTER | | --------QDTLTRETHLKAYLKANTSDVANGGPLFLNILRNWKE------ESDNKIIQSQIVSFKLFDNLKDHEVIKKSMESIKEDIFVKFFNSNLTK--MDDFQNTRISVDD---RLVQRKA--VSELSNVLNF------------------------ |
5 | 4gouA | 0.14 | 0.05 | 1.72 | 0.45 | CNFpred | | ---------------------------------KSLVESLIQDECNYVGVLTSLS-------EFSEIMTQILGPDVLKELFDHIP--------------------------------VLIQHHQKFISSLQ----------------------------- |
6 | 2pffB | 0.16 | 0.16 | 5.39 | 0.82 | HHsearch-2 | | AETDSWESFFVSVTSLPPSILEDSLENNEGVPPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVSGPPQSLYGLNLTLRKAKAPSGLDQSRERKLSNRFLPVASPFHSHLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS |
7 | 1w9rA | 0.15 | 0.11 | 3.78 | 1.11 | Neff-PPAS | | -------GSHMPEKKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAA-----EEDKVKEKP----------------------------- |
8 | 4q0rA1 | 0.23 | 0.09 | 2.75 | 0.42 | HHsearch | | --------------------------------------------------------LKGGPVSSIEVIAEFG-------NLKNFKDWYNNG---QFDKR-----KQETENKFEKD----------LRKKLVNEIILDDDFPSV----------------- |
9 | 2z6bA | 0.06 | 0.06 | 2.69 | 0.65 | SP3 | | IMKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEKAYKAGRDSLWYQQTKGRASRVTMIILTGNLESYGVEVKTPARSLLAMAATVAKSSDPAD |
10 | 2mxxA | 0.09 | 0.09 | 3.29 | 0.80 | PROSPECTOR2 | | MADEATDAARN------------NDGAYYLQTQFTNADKVNEYLAQHDGEIRAEAAADPAVVAAKAALDAVEGGSHNYGEVKAAYEAAFNNAFNAVRNKYVQRFQATYNNATEQEGKTYIQGETPEQANARYLKRVGAANNQNPAAEDKGATTPASKEHH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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