Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | YQRDCNEIVATLVDHKILVGEQRDKGLVKARALWEKVYPEEPFEVDLAAPVCDAPDFQSRIEYDIEAACARQRVFNYQVSLPHFADKRFLTEAVKRYKLHLYLKQKNPELFFVPCYDFDLIWHAHQLNPLIYTQD |
1 | 5cwdA | 0.06 | 0.06 | 2.57 | 0.75 | SPARKS-K | | ARSTCEKAARKAAESN--DEEVAKQAAKDCLEVAKQA--GMPARAAAESNDEEVAKIAAKACLEVAKQAEAARSFCEAAARAAANDEEVAKIAAKACLEVAKQAGMPTKEAARSFCEAAKRAAKESNDEEVEKIA |
2 | 1ya0B4 | 0.09 | 0.07 | 2.85 | 0.66 | FFAS-3D | | FIKAFIKFHGHVYLSKSL--EKLSPLREKLEEQFKELLFQKAFN-----------------SQQLVHVTVINLFQLHHLRDFSNEEQLCWTQLLALFMSFLGILCKSYNAYPLPAVKVSMDWRPRVFQEAVVDE- |
3 | 2v0pA | 0.10 | 0.08 | 3.01 | 0.23 | HHpred | | -FNDIISLYSKLEHTSLRDSPELLSTIKKLLNLKTAIFDRLALTIDDVS--------TASIKFLAVDYY--LGLLISRRQSNDQSKLIYLKKSVESFINFLTLLQDYK---LLDPLVGEKLGN------------ |
4 | 4oydB | 0.10 | 0.08 | 3.05 | 0.80 | MUSTER | | --ADPKKVLDKAKDQ---AENRVRELKQKLEELYKEARKLDLTQEMRRKLELRYIAAMLMAIGDIYNAIRQAKQEADKLKKAGLVNSQQLDELKRRLEELKEEASRKARDYG---FQLKLEYG------------ |
5 | 3o3mB | 0.06 | 0.06 | 2.52 | 0.61 | CNFpred | | --SIMQSCLEYGLKG-GVIIPGMCDTLICLGQNWKSAVPHKYISLVHPQNRK-----LEAGVKYLISEYKGVKRELEEICGYEIEE-EVYNEHRKTMRDFVEVAYKH--SNTIKPSIRSLVIKSGFFRKEEHTEL |
6 | 2pffB | 0.12 | 0.11 | 3.96 | 0.59 | HHsearch-2 | | EGNDIHALAAKENDTTLVKTKELIK-----NYITARIMAKRPFDKKSNSALFRNQGNTDDYFEELRDLYGDLIKFSAETNLEWLENKDYGVIQLAHYVVTAKLLGFTPGATGHSQGLVTAVAIAVRYLPPSILED |
7 | 1rktA2 | 0.07 | 0.06 | 2.46 | 0.70 | Neff-PPAS | | -------------------RRIIETGLDEGLRKLDKSAEHQSVWASISSYLDELTEGLRDVADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGQPVQPLATIAKFFLNNDGIIQNALYFD |
8 | 2dcoA | 0.17 | 0.04 | 1.21 | 0.34 | HHsearch | | YRTDCEELSGARTFRLAPA---QWSCRET-------------FQA------------------------------------------------------------------------------------------ |
9 | 2kjsA | 0.08 | 0.05 | 2.04 | 0.71 | SP3 | | -----------------------MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKI--KFALGELQKLKNVGDLADLVDKKLARKLEHHHHHH----------------------- |
10 | 2wuiA | 0.10 | 0.10 | 3.59 | 0.58 | PROSPECTOR2 | | CLAMCDRAFGQIEVPDENARVPALDILLRAGMGFLRQCCEPGSVLEILYLKCERSDENEPLLRRRELLEKQGQRFGLRQELPARLDVELASIYLQSLWDGICGTLAWTERLRDDPWNFRAGLDS-LRSSPYLLLA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|