Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | SRVNATMFDDMDIPRGRFGKPPRKITNVNFWHVVVDEFTEGIVQCMEARERLGLLCTISTNEGSITSFDIHKDMWCQMVIWSAYRFFAMMDKMFSIETITNFTETDLTETGQWRIFYRTWDVRDALKMKQVGPFLPALFSFHLENWTTMLSIGINKGYDRHNTRNMFMTIQSARNVLSGAMEVARYAVVLALPVCEYRTPLGLPDDSIGNAIKTCCTQMQANRLTETGISKDSGHKINDSSEEELYYRTIHDL |
1 | 4btgA | 0.11 | 0.11 | 3.83 | 0.64 | SPARKS-K | | LPLQFTRTFSASMTSELLWEGKGNIDPVMYARLFFQYAQAGVNQFTEYHQSTACYITGSSNRADAVGKVPPTAILEQLRLFHHITTDFVCHVLSPL----GFILPDA---------AYVYRVGRTATYPNFYALVDCVRASDLRRMLTALSSVDSKMLQATFKAKGALAPALISQHLANAAAVVSSVLTILGRLWSPSTPKELDPNGIDQLRSNLAIAYQDMVKQRGRAEVIFSDEEWFIEAMSETTSYIGQT |
2 | 2jswA | 0.12 | 0.09 | 3.07 | 0.76 | FFAS-3D | | ---------GIDPFTD-------------PTVIAENELLGAAAAIEAAAKKLEQLKPRAKPKEADESLNFEEQILAKSIAAATSALVKAASAA--QRELVAQGKVGAI-------------PANALDDGQWSQGLISAARMVAAATNNLCEAA----------NAAVQGHASQEKLISSAKQVAASTAQL-LVACKVKADQDSEAMAAGNAVKRASDNLVKAAQKAAAFE----------------------- |
3 | 2pffB | 0.14 | 0.12 | 4.18 | 0.31 | HHpred | | ---CLTEFENCYLEGNDIHALAQNDTTLVKTKELI-------KNYI--TARIMAKRPGEGNAQLVANTDDYFEE--LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFGLNILEWLENTPDKLLSIPISCPLIGVIQLAHYVVTAKPGELRSYLKGATGQGLVSWESFFVSVRKAITVLFFIGVRAYPNTS--LPPSILE-----------DSLENNEGVPS-----PMLSISNLTQEQQDYVNTNS- |
4 | 2z6bA | 0.11 | 0.11 | 3.86 | 0.59 | MUSTER | | KPNRLEGFS--D-PTGQY--PRRLGNDTNV-LNQGGEVGYDSSSNVIQDSNLDTAINPDDRPLSEIPTDDNPNMSMAEMLRRDEGLRLKVYWDTEGYPTIGIGHLIMKQPVRNKVLSKQVGREITGNPGSITMEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEYKAGRDSLWYQQTKGRASRVTMIILTGNLESYGVEVKTPARSLLAMAATVAKSS |
5 | 4v0jA | 0.09 | 0.07 | 2.68 | 0.72 | CNFpred | | --------------------------------DYFVVLVGDMIKEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYMRQIEKTI---------QYLIGSGMDPRTE-----NSPYLGFIYTSFQERATFIEHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEI------------DPDGTVLAFADMMRKKISMPAHLMYDG----RDDNLFDHFSAVAQRL |
6 | 2pffB | 0.14 | 0.13 | 4.31 | 0.56 | HHsearch-2 | | DQVLNLEFENCYLEGNDIHALAAKDTTLVKTKELI---KNYI------TARIMAKRSGEGNAQLVANTDDYFEE--LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFGLNILEWLENDKDYLLSIPISCPLIGVIQLAHYVVTAKPGELRSYLKGATGQGLTSWESFFVSVRKAITVLFFIGVRCYPNT--SLPPSILE-----------DSLENNEGVPS--PMLSISNAKNGPPQSLYGLNLRKA |
7 | 5cwmA | 0.08 | 0.07 | 2.79 | 0.77 | Neff-PPAS | | -EDELKRVEKLVKEAEELLRQAKEKGS----EEDLEKALRTAEEAAREAKKVLEQAEKE--------GDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQG------DPEVALRAVELVVRVAELLLRIAKESG----------SEEALERALRVAEEAARLAKRVLELAEKQ----GDPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQERVKE |
8 | 1ct9A3 | 0.23 | 0.04 | 1.12 | 0.33 | HHsearch | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GYSWIDTLKEVAAQLETARFRFP--YNTP------TSKEAYLYREIFE- |
9 | 5cwiA | 0.10 | 0.09 | 3.24 | 0.50 | SP3 | | EKLCKKAESEAREARSKAEELRQRHPD----SQAARDAQKLASQAEEAVKLACELAQEHPNADI-----AKLCIKAASEAAEAASKAAELAQRHPDSQAARDAIKLASQAAE--------AVKLACELAQEHPN-ADIAKLCIKAASEAAEAASKAAELAQRHPD----SQAARDAIKLASQAAEAVKLAC------ELAQEHPNDIAKKCIKAASEAAEEASKAAEEAQRHPDSQKARDEIKEASQKAEEVK |
10 | 6gupA | 0.06 | 0.06 | 2.38 | 0.80 | PROSPECTOR2 | | WPKGGLPTTTTTRKPDGLATTSYQSWGLGHLDRDTNEIAQCLKYIKEYKTEKFGGSASSNPHTHTVERMSDREAIQWVLPAEIRPVFEKLTSMAREAARDADAGTDVLLP----------LAMTSLVYPAHTPLSARRFLSLT-----------SPESPESPSEDDLFSSDLSDEQLGKTFGMIREQ-------GLLRGKQSVPAWVDKDTLLSRWRNATDHNGEAAIWDENALSNDDQAEPRNFLVNKVLKA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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