>PF07134 (325 residues) ESLLQRLFNHKTIPYISKKYINDELGAHVLRHTPKSFHATVLSEAIAGLDTFCVLKGGAA AAVHMNNPEPSHLTDVDMEVYVDDNNVTVDNLGSFVALQALEQRLKSICEQYYDDIDARL AGVHMSRLMYDNYSRGSMIIFKSYVNEAIEVEPDAVWFGLNRTQPFKSTVSMVNDEYFLV RYSFNVHMKSSSPMWLYKSNNKVKSIQYFPLDVFFLDLSVKRAPKPFVENYKLTRLYDSS VYVESIKYLIADQLECLMFNVFNRHWHKMDSRVTRLNALVQLSNSQPTEVERSRYEEIKS SNQRFTLRDVKKLLYWLGPLGPRLL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | ESLLQRLFNHKTIPYISKKYINDELGAHVLRHTPKSFHATVLSEAIAGLDTFCVLKGGAAAAVHMNNPEPSHLTDVDMEVYVDDNNVTVDNLGSFVALQALEQRLKSICEQYYDDIDARLAGVHMSRLMYDNYSRGSMIIFKSYVNEAIEVEPDAVWFGLNRTQPFKSTVSMVNDEYFLVRYSFNVHMKSSSPMWLYKSNNKVKSIQYFPLDVFFLDLSVKRAPKPFVENYKLTRLYDSSVYVESIKYLIADQLECLMFNVFNRHWHKMDSRVTRLNALVQLSNSQPTEVERSRYEEIKSSNQRFTLRDVKKLLYWLGPLGPRLL | |||||||||||||||||||
1 | 4amqA | 0.14 | 0.11 | 3.77 | 0.71 | SPARKS-K | ----------RMLIF--TYKLERYIKNKILPKIL------VVPD-----RDKYQIKG-----SFRRR--IPYITDIDIVNNV-HPEYDDTNI-----YQRIVDLINSFDDRFEIEKITELVELNINEIIWDLYK--------------LRWTSSEVKKILRGGIEVSFQDVVKNNSILLLQYFVKI--------------------EYYP---IGFDIAVRYKPFYQLKLANYSKEYYFMLFPLRLEYIIEKQLLVRIDSYRTIYESTAKSIIISIIKDIRKLNGIDMNIIDKIQEVSNNSAGQDKIIAWNTLLTQLYTNINKSV | |||||||||||||
2 | 4ok0A | 0.15 | 0.09 | 3.10 | 0.91 | FFAS-3D | ---------------LSEQ---ALNHEKLM--------RAIVKNLAD---TPMVLKGETALYLGYGLNRFS--EDLDFDCHKKIN--------------------------LLGRVKSAIPNG-----------------------------------------IILNDIHIKKDTDSVGRYMVRYATKDNKEEQT-------------------LKLEISYRDAPKESEVNVI----EGMRIAKIERIIDNKLCACLFDLHFLAKHYEEHFNLDLASRLKDFSKDPDKLVSDYLVDVKLDNQIMDLEETALELGVM-------- | |||||||||||||
3 | 5uvdA | 0.13 | 0.08 | 2.77 | 0.42 | HHpred | ------------------------------APLSSDELKTVVSVLAQKLNIDYAIMGGAATCLLSGDPN-RRTEDVDLVIHVDHRKI---------TADNLTTQLLK---SFP----------------------SDFEGVSQFGHT----I---PAYKLRRP----------GGT---VQL-VELEVFDYQ-S--------------WPQR------PQYDLQTATRTTL---NINGQKVKLFSPEWILREKILSQYQ---RQGSRKEGTDIRDIISMIPLAVPKPE-LNFNQ---SQE-----LQTALANLVQKRPD------ | |||||||||||||
4 | 5uvdA | 0.13 | 0.08 | 2.79 | 0.59 | MUSTER | ------------------------------APLSSDELKTVVSVLAQKLDSLYAIMGGAATCLLSGDPNR-RTEDVDLVIHVDHRKIT---------ADNLTTQLLKSFP----------------------------------SDFEGVSQFGHTIPAYKLRRP--------GGTVQLVELEVFDYQSWPQRPQYDLQTATRTTLNI-----------------------------GQKVKLFSPEWILREKILSQYQR----GSRKEGTDIRDIISMIPLAVPGKSQELQTALANLVQKRPDLS-SALKAKIKCSAVFHN--- | |||||||||||||
5 | 3q7jA | 0.10 | 0.09 | 3.32 | 0.79 | CNFpred | TVIAHEIAHQWFGDLVTMKWWNDWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTH-----PIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGEFRKGISKYLN-AEGSDLWTAIVSGKPVKVMEYWIPGYPVIK-----LKRN-GRKITMYQTRFLLGEEEGRWPVPVNIKK-VERILLEDEASIEADGLIKINADSAGFYRVLYDDATFSDVMGHY----RDLSPLDRIGLVDDLFAFLLSGH----IDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLT--AFDDDARAFCRSRM------- | |||||||||||||
6 | 4mtdA | 0.12 | 0.02 | 0.76 | 0.42 | HHsearch-2 | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYDLLDLLREAEPAKPPTV | |||||||||||||
7 | 5uvdA | 0.12 | 0.08 | 2.80 | 0.76 | Neff-PPAS | ------------------------------APLSSDELKTVVSVLAQKLDSLYAIMGGAATCLLSGDPNR-RTEDVDLVIHVDHRK---------ITADNLTTQLLKSFPS--------------------------------------------DFEGVSQFGHTIPAYKLRRPGGTVQLVELEVFDYQSWPQRPQYDLQTA--------------------------TRTTLNINGQKVKLFSPEWILREKILSQYQRQ---GSRKEGTDIRDIISMIPLAVPGKSQELQTALANLVQKRPDL-SSALKAKIKCSAVFHN--- | |||||||||||||
8 | 4ok0A1 | 0.19 | 0.07 | 2.18 | 0.82 | HHsearch | ------------------LSEQAL------------NHEKLMRAIVKNLDTPMVLKGETALYLGYGLNR--FSEDLDFDCHKKI-N----------LL----GRVKSA-----------IP--------------NGII-LN-----DIHIKDGRYMVRYATK----------DNK---EEQTLKLEISYRD------------------------------APKESVNV-----IEGMRI--A--------------------------------------------------------------------------------- | |||||||||||||
9 | 5uvdA | 0.12 | 0.08 | 2.72 | 0.90 | SP3 | ------------------------------APLSSDELKTVVSVLAQKLDSLYAIMGGAATCLLSGDPNRRT-EDVDLVIHVDHRKIT-------------ADNLTTQLLKSFP------------------------------SDFEGVSQFGHTIPAYKLRRP--------GGTVQLVELEVFDYQSWPQRPQY----------------------------DLQTATRTTLNINGQKVKLFSPEWILREKILSQYQRQ---GSRKEGTDIRDIISMIPLAVPGKPQELQTALANLVQKRPD-LSSALKAKIKCSAVFHN--- | |||||||||||||
10 | 5uvdA | 0.11 | 0.07 | 2.54 | 0.93 | PROSPECTOR2 | -------------APLSSDELKTVV-SVLAQ-------------KLDSLNIDYAIMGGAATCLLSGDP-NRRTEDVDLVIHVDHRKIT---------ADNLTTQLLKS-------------------------FPSDFEGVSQFGHTIPAY-----------------KLRRPGGTVQLVELEVFDYQSWPQRPQYDLQTATRTTLNINGQKVKLF----------------------------SPEWILREKILSQYQR---QGSRKEGTDIRDIISMIPLAVPGKSQELQTALANLVQKR-----PDLSSALAVFHN------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |