Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | ISNIISRKVKQLPESERNLLEYGSAYVGLNAGFSGLIANSLFRRILHVTQARLASSLPMAVMPFLTATLTYVNFLSYPLSTGDLNCETCAMTRGALVGFGMGGVYPILLAIPMNGGLAARYESSPLPRRGNILNYWITVSKPVCRKMVFPILLQTVFAAYLGSRQYRLLIKALQLPE |
1 | 4uosA | 0.03 | 0.03 | 1.90 | 0.90 | SPARKS-K | | VKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLEEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVDNEEVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLEDSEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVG-- |
2 | 2qzcA | 0.10 | 0.10 | 3.74 | 0.85 | FFAS-3D | | IVGNVENLINGVGELWNKYVKHGSDIFRYYLIQDGKYVEDLRALLIASSKGPIDKVTKILNLVETHGKLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLDWNKFLVAWTGYSIVGDYVIDSPNEVYKTWASFYATEYKKRIEAILYALDLLNIFINSVRF-EIGFWDASLRKDP |
3 | 6hcyC | 0.15 | 0.14 | 4.77 | 0.28 | HHpred | | --EYLAHLVPGFNTISAWALQSGALDVCGNDSKAKQRVMDIVR-NLGLDQGSLMARFPFYLSAVLCVFLFFYCVIRDPYVYEKKDNAISIIFPITALTLLALVYLPGVIAAILQLYRGTKYRR--FP---DWLDHWMLCRKQLGLVALGFAFLHVLYTLVIPIRYYVRVTQAILKKE |
4 | 6cc4A | 0.10 | 0.10 | 3.57 | 0.70 | MUSTER | | EAQAAAEQLKTTRNAYIQKYLKSLAAVSMFSRVLGFARDAIVARIF--AGMATDAFFVAFKLPNLLRRIFAEGAFSQPILAEYKS-ATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPG-FADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLN |
5 | 3rkoB | 0.09 | 0.08 | 3.21 | 0.99 | CNFpred | | FREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLLQTWLADAMA----GPTPVSALIHAATMVTAGVYLIARTHGLFLM--PEVLHLVGIVGAVTLLLAGFAALVQ-TDIKRVLAYST-------MSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQN |
6 | 5tj5A | 0.16 | 0.15 | 5.09 | 0.59 | HHsearch-2 | | SLVLNEKKINKMKRGEIFDMRYIILLMGVFSMYTGFLYNG-TENALLF-SNSYKMKLSILMFIHMTYSYFFSLANHLDIIGNFI--PGLLFMQGIFGYLSVCIVYPGLLNMLINMFLSPGTIDDELYPHQAKVQVWLLLVKPLHFKF-DIMIHQVCWALSLAHAQLSSVLMTIQIFR |
7 | 5cwqA | 0.11 | 0.11 | 3.90 | 0.84 | Neff-PPAS | | LAEALIEEARAVQELARVACERGNSEEAERASEKAQRVLEEARKVSEEDDEVLALALIAIALAVLALAEVACCRGNSEEAERASEKSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQECR |
8 | 2k73A | 0.16 | 0.09 | 3.01 | 0.45 | HHsearch | | -------------------------------------MLRFLNQASQGR---GAWL-LMAFTALLELTALWFQ----HV-MLLKPCVLSIYERAALFGVLGAALI------------GAI-----APKTP-------------LRYVAMIWLYSAFRGVQLTYEHTMLQLYPSPFA- |
9 | 6idpA | 0.11 | 0.10 | 3.66 | 0.70 | SP3 | | LRQPLLGLLGAPETVFAIIDHYWLWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTF---------DLG------IDGAAIATIIAFGVGIAIVAPKVAQRQWTSYQWQDLNISQSLTALGHIMGPAMLSQLLPPLSSMFATKLLASTAAVAAWALGSRFE |
10 | 5cwpA | 0.11 | 0.11 | 4.05 | 0.80 | PROSPECTOR2 | | MRELIERAKEAAERAQEAAERTGDPRVRELARELKRLAQEAAEEVKDPSSSDVNEALKLIVVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVVRELARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKAIQEAVESLREAEREKARERVREAVERAEEVQRDPE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|