Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | NSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFAKTVIGKARLNNITHIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT |
1 | 3butA | 0.07 | 0.04 | 1.60 | 1.33 | HHsearch-2 | | -----------------------------------------------------------------------------------------------SLESVKA-WGVTDSQTE--IVALAKVRNEDVVPIVVSGYHYTIE-NGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIANGE----KTKIRVAIKPTIEI-GRDVEVPVFLREEFTTKLL-- |
2 | 1yycA | 0.12 | 0.09 | 3.10 | 1.25 | Neff-PPAS | | ----------------------------------------------------HHHHHLEASADEKVVEEKASVISSLLDKAKGFFAIPTPEATVDDVDFKGVTRD------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVA------YSIAVSLMKDMCTWDIDYQLDIGLTFDIVVGDITIPVSTQGEIKLPSLRD |
3 | 3butA | 0.07 | 0.04 | 1.60 | 1.40 | HHsearch | | -----------------------------------------------------------------------------------------------SLESVKA-WGVTDSQTE--IVALAKVRNEDVVPIVVSGYHYTIE-NGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIANGE----KTKIRVAIKPTIEI-GRDVEVPVFLREEFTTKLL-- |
4 | 1yycA | 0.14 | 0.10 | 3.47 | 1.04 | SP3 | | --------------------------------------------------GHHHHHHLEASADEKVVEEKASVISSLLDKAKGFFAIPTPEATVDDVDFKGVTRD------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYSIAVSLMKD---MCTDWDIDYQLDIGLTFDIPVVG-DITIPVSTQGEIKLPSLRD |
5 | 1yycA | 0.12 | 0.09 | 3.11 | 0.84 | SPARKS-K | | --------------------------------------------------GHHHHHHLEASADEKVVEEKASVISSLLDKAKGFFAIPTPEATVDDVDFKGVT---RDG---VDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVG--SGTTVLDVPVKVA----YSIAVSLMKDMCTWDIDYQLDIGLTFDIVVGDITIPVSTQGEIKLPSLRD |
6 | 1yycA | 0.12 | 0.08 | 2.78 | 0.75 | FFAS-3D | | ----------------------------------------------------HHHHHLEASADEKVVEEKASVISSLLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRD-GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKV------AYSIAVSLMKDMCTWDIDYQLDIGLTFD----------------------- |
7 | 3butA | 0.07 | 0.04 | 1.46 | 0.73 | HHpred | | -----------------------------------------------------------------------------------------------SLESVKA-WGVTDSQTEI--VALAKVRNEDVVPIVVSGYHYTIE-NGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIANGE----KTKIRVAIKPTIEI-GRDVEVPVFLRESE------- |
8 | 1yycA | 0.14 | 0.10 | 3.33 | 0.89 | MUSTER | | -----------------------------------------GHHHH---------HHLEASADEKVVEEKASVISSLLDKAKGFF-IPTPEATVDDVDFKGVTRD------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVA------YSIAVSLMKDMC-WDIDYQLDIGLTFDIVGDIT-IPVSTQGEIKLPSLRD |
9 | 3butA | 0.08 | 0.04 | 1.41 | 0.92 | CNFpred | | ------------------------------------------------------------------------------------------------LESVKAMWGV--TDSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIAN----GEKTKIRVAIKPTIEI---------------------- |
10 | 1yycA | 0.10 | 0.07 | 2.76 | 1.27 | HHsearch-2 | | ------------------------------------GHHHH---HH---LEASADEKVVEKASVISSLLDKAKGFF-AE-K--LANIPTPEATVDDVDFKGVTRDG------VDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYSIAV----SLMDMCT--DWDIDYQLDIGLTFDIVG-DITIPVSTQGEIKLPSLRD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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