>PF07044 (366 residues) VITAANYKQYADKLSDGQKALFEKYPETYRMPVFKTHRSAAYPQFIYDATKKNATDTKLV QGGNGLENYVEGTPFPIPANGLEAIWNHIVRYRGGSVSRVVGQATPQANGDYTLVRFKDE FTFRNKLKDFDPSTDNNVLFYFKQNVVSPARLAGNVLLVHETLDQVKEPRKAWVYNAGQR RVRRAPQVAYDGPGTASDGLRTSDNFDMFNGAPDRYDWKLVGKQEMYIPYNSYELNSGDV KYDDIVKAGHINQDLTRYELHRVWKVEATLKEGKRHIYGKRVFYIDEDTWQATEIDHYDG RGQLWRVAEAHNMMFYDTLVPWYAVETLYDLNSGRYLVLGLDNEESGSYEFGFERTQKDY TPAALR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VITAANYKQYADKLSDGQKALFEKYPETYRMPVFKTHRSAAYPQFIYDATKKNATDTKLVQGGNGLENYVEGTPFPIPANGLEAIWNHIVRYRGGSVSRVVGQATPQANGDYTLVRFKDEFTFRNKLKDFDPSTDNNVLFYFKQNVVSPARLAGNVLLVHETLDQVKEPRKAWVYNAGQRRVRRAPQVAYDGPGTASDGLRTSDNFDMFNGAPDRYDWKLVGKQEMYIPYNSYELNSGDVKYDDIVKAGHINQDLTRYELHRVWKVEATLKEGKRHIYGKRVFYIDEDTWQATEIDHYDGRGQLWRVAEAHNMMFYDTLVPWYAVETLYDLNSGRYLVLGLDNEESGSYEFGFERTQKDYTPAALR | |||||||||||||||||||
1 | 4z48A | 0.17 | 0.11 | 3.59 | 1.78 | SPARKS-K | --------------------------------------------------------------------------TDPVKAGYDLAVR-DQVDTSQDSYSEAV--SINRGGKVLTRSFKTYSKHFG---------KDGKDEYSLIVFDRPADVNGTKYLVWSYRG-LEQDDD-WVYLPAESLVRRISGSSKFASFRS-----DLSNEDIQNLDDVDEYDYLLQGEENVD-------------------------------GIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKIDG--IWTVTQRVERPREGSFTVIDW-----SNLRYDVGLSDAYFEHSALQ | |||||||||||||
2 | 4z48A | 0.18 | 0.11 | 3.74 | 1.86 | FFAS-3D | ----------------------------------------------------------------------------DPVKAGYDLAVRDQVDTSQ--DSYSEAVSINRGGKVLTRSFKTYSKHF---------GKDGKDEYSLIVFDRPADVNGTKYLVWSYRGL--EQDDDWVYLPAESLVRRISGSSKFASFRSD---LSNEDIQNLD-DVDEYDYLLQGEENV--------------------------------DGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKIDG--IWTVTQRVERPREGSFTVIDWSN-----LRYDVGLSDAYFEHSALQ | |||||||||||||
3 | 4z48A | 0.17 | 0.11 | 3.51 | 2.70 | HHpred | ---------------------------------------------------------------------------DPVKAGYDLAVR-DQVDTSQDSYSEA-V-SINRGGKVLTRSFKTYSKH-F--G------KDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQ-DDD-WVYLPAESLVRRISGSSKFASF-RSD--LSNEDIQNL--DDVDEYDYLLGEENV--------------------------------DGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKID-GIWTVTQ-RVERPREGSFTVIDWSN-----LRYDVGLSDAYFEHSALQ | |||||||||||||
4 | 4z48A | 0.16 | 0.10 | 3.44 | 1.64 | MUSTER | --------------------------------------------------------------------------TDPVKAGYDLAVRDQ-VDTSQ--DSYSEAVSINRGGKVLTRSFKTYSKHF---------GKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQD--DDWVYLPAESLVRRISGSSKFASF---RSDLSNEDIQNLD--DVDEYDYLLQGEENV--------------------------------GIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKIDG--IWTVTQRVERPREGSFTVIDWSN-----LRYDVGLSDAYFEHSALQ | |||||||||||||
5 | 4z48A | 0.16 | 0.10 | 3.45 | 3.21 | CNFpred | ------------------------------------------------------------------------------KAGYDLAVRMDQVDTSQDSYSEAVMSINR-GGKVLTRSFKTYSKHF---------GKDGKDEYSLIVFDRPADVNGTKYLVWSYRGL-EQDDDMWVYLPAESLVRRISGSSKFASFMRSD--LSNEDIQNL--DDVDEYDYLLQGEENVD-------------------------------GIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKID-GIWTVTQMRVERPREGSFTVIDWS-----NLRYDVGLSDAYFEHSALQ | |||||||||||||
6 | 4z48A | 0.17 | 0.11 | 3.52 | 3.24 | HHsearch-2 | --------------------------------------------------------------------------TDPVKAGYDLAVR-DQVDTSQDSYSEA-V-SINRGGKVLTRSFKT-----YSKHF----GKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQ-DDD-WVYLPAESLVRRISGSSKFASF-RSD--LSNEDIQNL--DDVDEYDYLLGEENV--------------------------------DGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKID-GIWTVTQ-RVERPREGSFTVIDWSN-----LRYDVGLSDAYFEHSALQ | |||||||||||||
7 | 4z48A | 0.17 | 0.11 | 3.58 | 2.37 | Neff-PPAS | -----------------------------------------------------------------------------VKAGYDLAVRDQVD---TSQDSYSEAVSINRGGKVLTRSFKTYSKHFG---------KDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQ--DDDWVYLPAESLVRRISGSSKFASF---RSDLSNEDIQNLD--DVDEYDYLLQGEENVD-------------------------------GIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKIDG--IWTVTQRVERPREGSFTVIDWSN-----LRYDVGLSDAYFEHSALQ | |||||||||||||
8 | 4z48A | 0.17 | 0.11 | 3.51 | 4.78 | HHsearch | --------------------------------------------------------------------------TDPVKAGYDLAVR-DQVDTSQDSYSEA-V-SINRGGKVLTRSFKT-----YSKHF----GKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQ-DDD-WVYLPAESLVRRISGSSKFASF-RSD--LSNEDIQNL--DDVDEYDYLLGEENV--------------------------------DGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKID-GIWTVTQ-RVERPREGSFTVIDWSN-----LRYDVGLSDAYFEHSAL- | |||||||||||||
9 | 4z48A | 0.16 | 0.10 | 3.45 | 2.00 | PROSPECTOR2 | T--------------------------------------------------------------------------DPVKAGYDLAVRDQ-VDTSQDSYSEAVSINR--GGKVLTRSFKTYSKHF---------GKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQDDD--WVYLPAESLVRRISGSSKFASF---RSDLSNEDIQNLD--DVDEYDYLLQGEE-------------------------------NVDGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKIDG--IWTVTQRVERPREGSFTVIDWSN-----LRYDVGLSDAYFEHSALQ | |||||||||||||
10 | 4z48A | 0.17 | 0.11 | 3.51 | 2.26 | SAM | ---------------------------------------------------------------------------DPVKAGYDLAVR-DQVDTSQDSYSEA-V-SINRGGKVLTRSFKT-----YSKH------KDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQ-DDD-WVYLPAESLVRRISGSSKFASF-RSD--LSNEDIQNL--DDVDEYDYLLGEENV--------------------------------DGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKID-GIWTVTQ-RVERPREGSFTVIDWSN-----LRYDVGLSDAYFEHSALQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |