Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | TRCLLRVLAGRTVDLPGGGTLHITCTKTYVIIGKYSKPGERLSLARLIGRAMTPGGARTFIILAMKEKRSTTLGYECGTGLHLLAPSMGTFLRTHGLSNRDLCLWRGNIYDMHMQRLMFWENIAQNTTETPCITSTLTCNLTEDSGEAALTTSDRPTLPTLTAQGRPTVSNIRGILKGS |
1 | 3tu8A | 0.13 | 0.12 | 4.27 | 0.64 | SPARKS-K | | EAQIRQAMKTGTIEFDSPGTLNVFLHPANGGVRIDLDSGNQGEPAKILWLPWKQGELQTLMLFFTYYLSGKVFAGDGGPVWHIDAPVANQFWRRMSSTDRQVAYLHRAGQSDSLWNLAYLEGAAPSTYGRDNLGQAVVGGIVTGRQQQYATTSSGSSAWSPLTYTLQQRKQ-------- |
2 | 3lm4D | 0.12 | 0.11 | 3.78 | 0.39 | FFAS-3D | | ---------GKTFEYPDGHNLQLLWEAEKYRIDHLNLSSDVTAVKDSFERHLGFRTTERVIGAWSSNLLGHEVACRDTGKLHHLAGTGQHNIDAVEFRDYDIQIEAGPVFEPGGNRIELFGEAGYLHLDP----DAETKTWQSDIDTGLAVGGAKLPWESYFTYGTPSPLSLDQHIE-- |
3 | 4ohvA | 0.11 | 0.09 | 3.39 | 0.32 | HHpred | | ------EENVQEFVLKEDCELRFAAGDDSDVCLEL-VKGEIFGTELLLNKKYTFPAKSRVAAFTWKGATIELVGVAESTPIHAA-EEVRKKREEQKAKGPRLLLVGPIFVELDVGQNSVSV---PG---------TVAAVLVQKTAIDGFER----NQPIVFNFGHTSPSAN------- |
4 | 5c2vB2 | 0.11 | 0.09 | 3.42 | 0.56 | MUSTER | | --------SNRDVVYPDGKYIAVTHQTPKNWL--PVCEAENGQVFTNNVTIIETKAGGKVARLPLDDLNN---YDGNPYGMAM-DPK-GKYLYIGVRGMHRVTILDVLGLVRSST----QEELDYLRDDLGLVRDYLVARVPTGLGPSSVCLSDGKFC--AANYFSNNVTRTA---VD- |
5 | 3u0sA | 0.08 | 0.05 | 2.01 | 0.67 | CNFpred | | VDTAFQCPAGIAVRHMRPYQLIVAEQPKKLWSYDIKGPAKIENKKVWGHIPGT--KGGAAGMDFDEDNNLLVANWG-SSHIEVFGPDGGQPKMRIRCPFEKPANLHFKP---QTKTIFVTEH--------------------------------------------------------- |
6 | 2db3A | 0.13 | 0.12 | 4.23 | 0.40 | HHsearch-2 | | RDIIIDNVNKSGYKIPSGRDLMACAQTGSGKTAAFVSPTRELAIQINEARKFAFESYL-------KIG--IVYGGTSTRGCHVVPGRLLDFVDRTFFEDTRFVVLDEADLDMDMRRIMTHVTMRPEH-QTLMFSATFPEEIQ-----RMAGEFKNYVFVAIGIV-GGACSDVKEILSGD |
7 | 3k1qA3 | 0.18 | 0.17 | 5.44 | 0.60 | Neff-PPAS | | TTVALNMPPPRQLDFTVGNDARITCDPYYQLAVCIFKDGQYVRVNPEKASVVTNAPNRDLHFVLDNHVLLYLCDVTPSGLGDRIAFPIVDIYRIAFPRNTPVRASLP--YTGGGAHLTSGGNPF-------MSLTTPPAVLPAGVALAALSTSVATQYPTYTLPGVYEYVIE------- |
8 | 2c4rL3 | 0.19 | 0.13 | 4.32 | 0.50 | HHsearch | | IESQIESAFQREVRLPSGGSIVIDSTEALTADINS-ARGDIEETAFNTNLE--------------------------------AADEIARQLRLRDLGG--LIVID--FIDMTPVR------------HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQLSPSLGESSH----- |
9 | 2fkjA1 | 0.17 | 0.15 | 4.96 | 0.45 | SP3 | | --------NSVSVDLPGEMKVLVSKEKNKDLIATVDKLELKGTSDKNNGSGVLKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKV---TSKDKSSNEKGELSEKKITRADKSSTEEKFNEKGELKITRADKSSTEEKFNEKGEEKKITRADKSTEEKFNEKGELSE---------- |
10 | 1p5uB | 0.09 | 0.07 | 2.79 | 0.58 | PROSPECTOR2 | | ADLTASTTRTATLVEPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDG----------------NNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTV--------------SNQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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