Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | MSDRLGQTAKGKDGKTKYSSLNLFDTYKGKSLETQKSAVAPRHGLQSLGKVIPARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQETPDQKSTDALSAQQPESQLPPASQTSASNQQRRIPIAQETPASTAAVVGAAAGAKSWAAASVTHGAQGDGGKGSNQLSPFSREEFPTLQAAGDQDKAGRERDT |
1 | 4k0mC | 0.18 | 0.17 | 5.52 | 1.49 | SPARKS-K | | KVYTIDEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG---LGK--QVRVLAIAKGEKIKEAEEAGAD---YVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
2 | 4k0mC | 0.18 | 0.17 | 5.53 | 1.41 | MUSTER | | TIDEAARTAKFDETVEVHAKLGIDPR---RSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEII-----QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
3 | 4k0mC | 0.15 | 0.15 | 4.98 | 2.47 | Neff-PPAS | | --YTIDEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--- |
4 | 4k0mC | 0.14 | 0.13 | 4.57 | 1.42 | PROSPECTOR2 | | KVYTIDEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
5 | 4nl6A | 0.10 | 0.09 | 3.44 | 1.26 | SPARKS-K | | ICETSGKPKTTPKRKPAKKNKS-----QKKNLQQWKVGDKCSAIWSEDGCIYPATVVREEQNLSDLLSPICEVANN----IEQNAQENENESQVSTDESE--NSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPICPDSLDDADALGSMLISW |
6 | 4k0mC | 0.22 | 0.20 | 6.32 | 0.44 | FFAS-3D | | --DEAARTAKFDETVEVHAKLGI---DPRRSDQNVRGTVSLPHG---LGK---QVRVLAIAKGEKIKAEEAGADYVGGIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----- |
7 | 3pcoB2 | 0.29 | 0.07 | 2.19 | 0.35 | HHpred | | ---ILSEC-K-KVGVNQVVGVNLFDVYRGKGVAEGYKSLAISLILQDTSRTLEE--------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 6e5p2 | 0.11 | 0.11 | 3.87 | 1.02 | MUSTER | | LVESGGGLVKAGG------SLILSCGVSNFRISAHTMNRVPGGGLEWVASISTSSTYRYADAVKTVSRDDLEDFVYLQMMRVEDTAIRKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALVKDYFPEPVSWNSGALTSGVHTFPAVLQSSGLYSLSSVV-TVPSSSLGTKPSNTKVD |
9 | 4ue9B | 0.39 | 0.07 | 1.97 | 0.73 | HHsearch-2 | | -------------PHMRYSKVDLLALYEGKSR-----QCSTRLELQTLGKI------------------------------------------------------------------------------------------------------------------------------------------------ |
10 | 1pdiR | 0.10 | 0.10 | 3.75 | 2.06 | Neff-PPAS | | GQTINGTLRINNTLTIASGGANITGTVNMTGGYIQGKRVVTQNEIDRTAIMMWAADSLPSPLYASRIGTRYGGSSSNPGLPVRGSGRGSHLTNPNVNGNDQFGKPRLGVGCTGGYVGEVQIQQMSYHKHAGGFGEHDDLGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPESQRNSKYTLNRPELI---GN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|