Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | VKFFSYSTSMFSLCVMPYVLTKTGLGASSLAMKVAFCGFIGFFTFLTPALLHLITKGYVVRLYHNKDTDMYTAVTYSVLLMEKKTVFHQSDVKIPDVSRMFTSFYAKKRSMLVNPMLFELPHDYNHLMGYDR |
1 | 3mmhA | 0.14 | 0.13 | 4.39 | 0.91 | SPARKS-K | | LHFSASDKAALYREVLPQIESVVADETD-----------WVANLANTAAVLKEAFWFWVGFYLVDTRSDELVLAPFQGPLACTRIPVVVGDVAHPDHIAIVVPLFSDGRCIGVLLAQFDDALYLGELAKILE |
2 | 2iybA | 0.15 | 0.08 | 2.55 | 0.56 | FFAS-3D | | -----------------------------------------------------------VHIYHHTGNNTFRVVGRKIQDHQVVINCAIKGLKYNQATQTFHQWRDARQVYGLN---FGSKEDANVFA---- |
3 | 3kp9A | 0.08 | 0.08 | 2.94 | 0.24 | HHpred | | ---YCTTAIILVAGLGLVTVLGHRWLDGG---KLAFSYILVAFLTLVTTIGVYANRQIGGTMYGAYWKELFG-AA---FDQVPYVECSPNGPGTPQGITSYPTWIINGRTY----TGVRSLEALAVASGYPL |
4 | 2o6tA | 0.07 | 0.07 | 2.81 | 0.75 | MUSTER | | APRPLREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVVVSSSCD-FPQRIEMGLRVARLGNSSVQYEL-ALFLEGQREACAAGRF--VHVFVERRSSRPQELRDALAALQS |
5 | 4v1aw | 0.05 | 0.05 | 2.14 | 0.64 | CNFpred | | --CYGHTQFHLLPDKLKREKLLKQNCADQIEVVFRANAIASLFAWTGAQAMYQGF-PFVSQGVITD-GKYFSFFCYQLN----TLALTAQADQN---PRKNICWGTQSKPLYETIEKGFNDDVLLQLVQFLL |
6 | 3k07A | 0.07 | 0.07 | 2.79 | 0.55 | HHsearch-2 | | FGPLAAGAALLAIVVIPILMGYWPLNFLRVYHPKTLLVAALSVLT-V----LWPLNKV--GGEFLPQEGDLLYMPSTLPGIETTIQLKPQEQAVPGVGAMVGETVEGIARYPIPQSWRDSPQALRQLPILTP |
7 | 1sjwA | 0.06 | 0.05 | 2.36 | 0.64 | Neff-PPAS | | -------SRQTEIVRRMVSAFNTGRTNPATLEHGIHTGPKAFAQLVGWVRATFSEEARLEEVRIEERGPWVKAYLVLYGRHVGRLVGMPPTDRRFSG-EQVHLMRIVD-GKIRDHRDWPDFQGTLRQLGDPW |
8 | 2hjqA1 | 0.08 | 0.02 | 0.91 | 0.36 | HHsearch | | ----------------------------------------------------------------------------------------MFTAK----LIKGKTYNVMGITFRAGVSQTVPKKLYEYLNENP- |
9 | 5gsnA | 0.08 | 0.08 | 2.95 | 0.80 | SP3 | | YLWSNGPKEGLEFADYS-FEEHFGKQIASYPPRAVLFDYIEGRVHKADVRKWIRFNSPVRWVSYDAETAKFTVTAHN-HETDSTYSAAFDHVNVPFYEG-----FDTFNGRIVHAHDFRDAREFE-----GK |
10 | 3mmhA | 0.10 | 0.10 | 3.61 | 0.51 | PROSPECTOR2 | | MHALHFSASDKAALYREVLPQIESVVADETDWVANLANTAAV-------LKEAFGWFWVGFYLVDTRSDELVLAPFQGPLACTRIPFGDAHPDHIACSSLSRSEFSDGRCIDSEHLAQFDETDALYLGELAV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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