Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | EDGGEQQCRVVFTFDSEEHSYVLFSLIGDEEAGISALRYVLDENGEMSGFSDIETDDEWAMVEEVMNTVL |
1 | 4q63A | 0.11 | 0.10 | 3.64 | 0.96 | SPARKS-K | | NHGE-INASLIVEISSN---GAVVVKQKTDIPKLQILCYEVIRAEDNNIVLHFTKEDETNKLFLVLKRLR |
2 | 4l6eA | 0.09 | 0.09 | 3.30 | 0.57 | FFAS-3D | | EEDEEILFKELYRWDRDVSQWIKILWHTKNSNNALVWTASDYADGEEQLAVRFKTKEVADCFKKTFEEC- |
3 | 3imoA | 0.08 | 0.07 | 2.77 | 0.23 | HHpred | | -GADT---KNVLWVTINGERYAFSYNHSS---EKIEMRKGN-IQG--NTIHEFDNSTPLSKLVEIFKGL- |
4 | 3qf7A | 0.19 | 0.17 | 5.54 | 0.82 | MUSTER | | RNAVDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAA------PTSVKQEVEKIL |
5 | 1tu1A | 0.09 | 0.09 | 3.23 | 0.67 | CNFpred | | ------KLHKRWDINIHGHAAVLLDYQWQEGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAM |
6 | 5boiA2 | 0.10 | 0.06 | 2.10 | 0.42 | HHsearch-2 | | DLNEEVLCYEF-LGTIKNDTYRIFINADT-GFEEKVEKLQN----------------------------- |
7 | 1hdhA2 | 0.10 | 0.10 | 3.69 | 0.79 | Neff-PPAS | | DENTVTGWELFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLAD-SQPGKLAELIEHWKRYV |
8 | 5y31B4 | 0.12 | 0.09 | 3.04 | 0.44 | HHsearch | | ---------AVKHFSVKGDVYICLTRFIG---DSKVMKWGG----S--SFQDMPSRGVFQPLGSDYSTQ- |
9 | 4mjsA | 0.10 | 0.09 | 3.19 | 0.86 | SP3 | | PHMR-----VRLKAHYGGDILITSVDTGLHQQHPLTLKWVD-SEGD---PCTVSSQMELEEAFRLACQGR |
10 | 2oqbA | 0.13 | 0.13 | 4.47 | 0.42 | PROSPECTOR2 | | ANGEIQRHAEQQALRLEGPDAAGIALYSHEDVCVFKCSVSRETEGCNSVLIQFATPHDFCSFYNILKTCR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|