>PF06809 (341 residues) MATPVPPPSPRHLRLLRLLLSGLILGAALNGATARRPDATTCPGSLDCALKRRAKCPPGA HACGPCLQSFQEDQRGFCVPRKHLSSDPSVVTMETKIVKLWMGPSISGGCLLQELALKEK EAGHSRLTAQPLLEAAQKLLEPAATLGFSQWGQRLEPGLPSTHGTSSPIPHTSLSSRASS GPVQMSPLEPQGRHGNGLTLVLILAFCLASSAALAVAALCWCRLQREIRLTQKADYAATA KGPTSPSTPRISPGDQRLAHSAEMYHYQHQRQQMLCLERHKEPPKELESASSDEENEDGD FTVYECPGLAPTGEMEVRNPLFDHSTLSAPVPGPHSLPPLQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MATPVPPPSPRHLRLLRLLLSGLILGAALNGATARRPDATTCPGSLDCALKRRAKCPPGAHACGPCLQSFQEDQRGFCVPRKHLSSDPSVVTMETKIVKLWMGPSISGGCLLQELALKEKEAGHSRLTAQPLLEAAQKLLEPAATLGFSQWGQRLEPGLPSTHGTSSPIPHTSLSSRASSGPVQMSPLEPQGRHGNGLTLVLILAFCLASSAALAVAALCWCRLQREIRLTQKADYAATAKGPTSPSTPRISPGDQRLAHSAEMYHYQHQRQQMLCLERHKEPPKELESASSDEENEDGDFTVYECPGLAPTGEMEVRNPLFDHSTLSAPVPGPHSLPPLQ | |||||||||||||||||||
1 | 3j8dA | 0.10 | 0.09 | 3.52 | 1.37 | Neff-PPAS | -ASESVDSFKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTATYYCQQNNEDPYTFGGGTKLEIKQVQLLQPGAELVKPGASASGYTFTNWWMHWVRLRPGRGLEWIGRIDPNSDVNKYNEKFENRASLTVDKHSSTAYMQLTSEDSAIYYCARWFFPWYFDVWGTGTTVTVSRADAAPTVSIFPPSSEQLTSGGASVV-----CFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRSAKTTAAPVCGGTTGSSVTLGCFPEPVTLSSGVHTFPALLQSGLYTLSSSVTVTSNT | |||||||||||||
2 | 2nbiA1 | 0.13 | 0.11 | 3.94 | 1.11 | PROSPECTOR2 | QPSDLNPSSQP---------------------SECADVLEECPRPPSCLSFGRPDCDPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVI----------------------------TSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINSPTMMPSPEPSSQPSDCGEVIEECPTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPTR | |||||||||||||
3 | 4btgA3 | 0.13 | 0.10 | 3.49 | 0.99 | SPARKS-K | GRTATYPFDANAVVSSVLTILGRLWS---PSTPKELDPSARLRNTSNLAL----------------FIAYQDKQRGRA--------EVIFSD--EELSSTIIPWFI----------EAMSEVSPFK--LRPINETTSYIGQTSAIDHMGQPSHVVYEDWQFAKEITAFTPVKLANNSNQRFLDVLAPIGNTRGTVNSNGAEMTLGFPSVVERDYPMVAIAALRTG-----------------IVDESLEARASNDKRSMFNYYAAVMHYAVA-------HNPEV----VVSEHQGVAAEQGSLYLVP-VGYNGSIRTPEPLEAIAYNKPIQPSEVLQAKVL | |||||||||||||
4 | 1o9iA | 0.13 | 0.09 | 3.14 | 0.65 | FFAS-3D | YNAKPDRSDPIMARRLQESLGGTTGMMSFLSQGWASTGAEKYKDLLLDTG-------------------------------------------TEEMAHV--------EMISTMIGYL-------LEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGN---------------------LVADMRFNVVRESEARLQVSRLYSMTE----------------------DEGVRDMLKFLETQHQLQFMKAQEELEE--KYGIIVPGDMKEIEHSEFSHVLMNFEGQVAKDGEKQENPEAGIPHIKPGDPRLHNHQ--- | |||||||||||||
5 | 1vb5B3 | 0.20 | 0.04 | 1.31 | 0.37 | HHpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GYVVNKAGTYLLALACHEN----AIPFYVAAETYKFHPTLKSG---DVMLMERDLIR---------GNVRIRNVLFDVTPWKYVR---------- | |||||||||||||
6 | 5az4A | 0.09 | 0.09 | 3.33 | 0.84 | MUSTER | VGVNAFDPNLQQNQTAAFWGTKVNLDITLNGVRIQNADIQSIDDA---IAYINTFTAPTDTRDGTGVKAVKNKDGSGIDFVNDNADGTT-----DNMKNINLVVANTNTAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNGSSLWTATNITFTPQPPQAATNVQLTGGLNAQIITSSNPVDIGPMYNPDGGPAFQPGANATTRPTEPGSAAYWDAVNGGLLNTNVLLQRDARYGVDYDGSGTFAAADINQNIKVVTADGHF--------AISNANEQSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAKAFDGPLVIGNQIKESE | |||||||||||||
7 | 5a22A | 0.08 | 0.03 | 1.16 | 0.84 | CNFpred | -----------LAYLCQKFLDLHKLTLILNAVS---------EVELLNLARTFK------------GKVRRSSHGTNICRIRVPS---------------------LGPTFIS-------------------------------------------------------------------EGWAYFK-------KLDILMDRNFLLMVKDVIIGRMQTVLSMVCRIDNLFS-----------------------EQDIFSLLNIYRIGDKIVER------------------------------------------------------------------- | |||||||||||||
8 | 2lwjA1 | 0.19 | 0.03 | 0.94 | 0.51 | HHsearch-2 | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSMQTSFKTGDKAVYPGQGVGEVMGIEHTRILENGMRIMIPINKVGSVGLRE | |||||||||||||
9 | 3k1qD | 0.12 | 0.12 | 4.12 | 1.24 | Neff-PPAS | -GQPAPLFDLNDLQELAGCYARPWTSRFSHLAISTGSLPVWSARHLNPFAGGQITSHQGITWRDPVLSSLAPVPAIQPPPVWAVAENVLLDSNNYPTYVLNLSSMWPINQDVHIMTMWALSDQMPAATTAALMAYTGVPIAHLAQTAYRFAGQLPQSPDSTMVSTEFAKPALNPDQAVLKWNDGARAAPPAAAQSSYIRCISPHWQHQIVEVAGALMSQSVTAVTGLPALIDEATLPAWSQGVANLTGNGQGVVDYNPVPMAAARHLQWRQDGLI--------------TAAQEAQLNNDYTAYALTIERHLTAMLVANPIAAGRMPIQPFNAADFGQAGQ | |||||||||||||
10 | 1zzaA | 0.27 | 0.06 | 1.99 | 0.65 | HHsearch | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GS-MSIMDHSP-----TTGVVTVIVILIAIAALGALILGCWCYLRLQRIS---QSEDEESIV-GD----------GETKLVQSAKGPCVERKAKLMTGPEVHG------------------------------------------------------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |