>PF06802 (340 residues) MSRKFMQVYEYDREQYLDEFIEDRYNDSFIASPEYYSAEKYMCRYTILNHNCVNVRRCAL DSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCNWVSKVGDSVLYPVIFITHTSTRNL DKVSVKTYKGVKVKKLNRCADHAIVINPFVKFKLTLPNKTSHAKVLVTFCKLRTDIMPIE APYPGNVLVYTFPDIHKRIPGYIHINIEGCIDGIIYINSSKFSCVLKLHRSMYRIPPFPI DICSCCSQYTNDDIEIPIHDLIKDVVIFKNKEMVYYLKLNNKTIARFTYFNNIDTAITQE HKYVKIALGIVCKLMINNMHSIVGVNHSNTFVNCLLEDNV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSRKFMQVYEYDREQYLDEFIEDRYNDSFIASPEYYSAEKYMCRYTILNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCNWVSKVGDSVLYPVIFITHTSTRNLDKVSVKTYKGVKVKKLNRCADHAIVINPFVKFKLTLPNKTSHAKVLVTFCKLRTDIMPIEAPYPGNVLVYTFPDIHKRIPGYIHINIEGCIDGIIYINSSKFSCVLKLHRSMYRIPPFPIDICSCCSQYTNDDIEIPIHDLIKDVVIFKNKEMVYYLKLNNKTIARFTYFNNIDTAITQEHKYVKIALGIVCKLMINNMHSIVGVNHSNTFVNCLLEDNV | |||||||||||||||||||
1 | 4r04A3 | 0.13 | 0.12 | 4.09 | 0.65 | SPARKS-K | KVQLYAQLFSTGLNTILVNLISNAVNDTINVLPTITEG---IPIVSTI-LDGINL--GAAIKELLDELEAKVGVAEDINVFNTITGKYYVDSIDFSISLVSKNQVKVNGLYLNSDGHHNTSNFNISFWKLFGFENINFDKYFTLVGKTLGYVEFICDNNK---NIDIYFGEWKTSSSKIFSGNGRNVVVEPIYNPDTGISTSLDFSLYGYINK-VLIAPDLYTSLININTNYYSNEYYP-EIIVLNPNTFHKKVNINLDSSSFEYKWSTEGSFILVRYLEEKILQKIRIKGILSNT------------------QSFNKMSIDFKDIKKLSLGYIMSNFK | |||||||||||||
2 | 1uziB | 0.14 | 0.07 | 2.42 | 0.46 | FFAS-3D | YSNTY---QEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSLNKDRLEYGYISTSLMNVSQFATKFKVAKGSKAGYIDPISQLEMLLPRHSTYHIDMRLSSDGKQIIITATMMGTAINP------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
3 | 3nk3A | 0.16 | 0.09 | 3.05 | 0.34 | HHpred | ---------------------------------------PAACKHSSLLHECGSVVQVTP-----DTLIYRTLINYDPVIIRTNPAVIP---IECHYPRRP---TWSPFNS-A-LSAEERLVFSLRLMSDDWGFQLGDILNIQAEVSTEVPLRLFVDSGDSSPHAIINGCLVDGRVDDFITPRREDVLRFRIDVFRGRNLIYITCHLKVTPADQG-PDPQNKACSFNKARNTWVPVEGSRDVCNCCETGNCE---------------------------------------------------------------------------------------- | |||||||||||||
4 | 3btaA | 0.17 | 0.15 | 5.04 | 0.49 | MUSTER | YGVKRLEDFDASLKDALLKYIYDNRG-TLIGQ---VDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKIINTSILNRYES--HLIDLSRYA-INIGSKVNFDNQIQLFNLESSKI-EVILKNYNSIRIPKYFNSISLYTIINCM-EIIWTLQDTQEIKQRVV----FKYSQMINISDYINRWIFVTIT--NNRL-NNSKIYINGNISNNIMFDTHRYIWIKYFN--LFDKELNEKEIKDLYDNQSNSG-------ILKDFYLQYDKP--YYMLDPNKYVDVYMYLKGPRGSVMTTNLNSSLYRGT--KFIIGNKDNIV--RNNDRVYINVVVKNK | |||||||||||||
5 | 3ei1A | 0.09 | 0.05 | 2.00 | 0.99 | CNFpred | --------------------------------------------------------------------------------------------------------VEVHNLLIIDQH--TFEVLHAHQFL-----------QNEYALS---LVSCKLGKD-PNTYFIVGTAMVYP---EEAEPKQGRIVVFQYSDG--KLQTVAEKEVKGAVYSMVEFN-GKLLASINSTVRLYEWTTELRTECNHYNN--IMALYLKTKG--DFILVGDLMRSVLLLAYKEGNFEEIARDFN--------------PNWMSAVEILD-DDNFLGAEN-AFNLFVCQKDSA | |||||||||||||
6 | 6c4rA3 | 0.14 | 0.02 | 0.61 | 0.36 | HHsearch-2 | MIDQFLTRYE----ASCQAYKDQQLSSQFNTNL-FEGDKALVTKFLEIN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 3oggA | 0.11 | 0.10 | 3.64 | 0.63 | Neff-PPAS | -NDSKILSLQNKKNALVDTSGYN-AEVRVGDNVQLNTIYTNDFKLSSSGDKIINLNNNILYSAIYENSSVSFWIKISKDLTNSHNEYTIINSIEQNWKLCIRNG---NIEWILQDVNRKYKSLIFDYSESLSHTGYNIMGYMKLYINGELKQSQKIEDLDEKLDKTIVFG------IDENIDENQMLWIRDFNIFSKELSEYYIINDN---YIDRYIAPESNVLVLVQYPDRSKLYTGNPITIKSVSDKNPYSRILNGDNIILHMLYNSRKYMIIRDTDTINCVYALKLQSNLG-------NYGIGIFSIKNIVSKNKYCSQIFSSFRENTMLLADIYKP | |||||||||||||
8 | 1nppA3 | 0.12 | 0.02 | 0.84 | 0.44 | HHsearch | -------------------------------------------EKVVIRAQGKEKYRLSLKGNA-----RDISVVTTFRIENGEVKVVESVCVNAPPISKPGQKITCEN------------KTEAKIV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 4fmzA | 0.15 | 0.13 | 4.46 | 0.55 | SP3 | LPAPINQIFP-D--ADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVASIQGIEYLLEYLLNGNQITDISPLSNLVK-LTNLYI-GTNKITDISATNLR-ELYLNEDNISDISPLANLTKYSLNLGANHNLSDLSPLSNTGLN-YLTVESKVKDVTPIANLTDLYSDISPLAS-LTSLHYFTQITDITPVANTRLSLKIGNNITDLSPLANLSQLTWLEIGTN-------QISDINAVKDLTKLKLNVGSNQIS-DISVLNNLSQLNSLFLNN---------NQLGNEDE--------VIGGLTNLTTNHITDIRPLSLSKDSAD--FANQ- | |||||||||||||
10 | 3s6pA | 0.06 | 0.06 | 2.55 | 0.91 | PROSPECTOR2 | -----------DNFTAAAQDLAQSLDANTVTFPANISSMPEFRNWAKGKIDLDSDSIGEMSLDVVNDLIEWLNNLADINFTNDTTYYVRIRVLRPTYDVPDPTETYKAITCEANMPTLVDQGFWIGGQYALTPTSLPQYDV--SEAYALHTLTFARPSSAAALAFVWAGLPQGGTAPAGTPASSGGYLTWRHNGTTFPAGSVSYVLPEGFALERYDPNDGSWTDFASAGDTVFRQVAVDEVVVTNNPAGGGSAPTFTVRVPPSNAYTNTVFRNTLLETRPSSRRLELPMPPADFGQTVANNPLLKETLGCYLVHSKMRNPVFQLTPASSFGAVSFNNPGY | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |