Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLMVVPGIIMAILLALAPVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFRLYML |
1 | 3tx3A | 0.10 | 0.08 | 3.06 | 1.22 | SPARKS-K | | YSNSGLAYIGRGLELIR-------RYVVVPILTNLILFSLAFTWLYGEVDYWEF-------------ILWPLAVITIIALFSFIFSTIMHLIAAPFNGLLAEKVERYESGESLRTLKREMQKLMYYIPRALGFFLLSLVIVIGQVLWYIFVCWMMSIQYLDYPFDNH-KLSF----PRMRSELHQQRSKTLGFGFGVTVLTMI-----PLINLIIMPLAVCGATSLWVDHYRRSALS------- |
2 | 6d9zF | 0.10 | 0.09 | 3.20 | 1.54 | FFAS-3D | | ------QYLGEGLKLMMRGLRLFVLLPLSINLILFIGLIGFAINQFSHWVDWLMPSLPEWLSFLQFILWPLFVTLVLLIVFFTFTLIANLIAAPFNGFLAEKVEVVVRGTDAFSWAELMAMVPRTIGRELRKLGYFLPRAIALFILSLIPNLIAAPLWLLFGVWMMAHKLG----WNEMLAWLRSKRWACMGFGGITYLVLLI-----------------PLVNLVAMPAAVAGAVLFWV---- |
3 | 3rkoC | 0.08 | 0.07 | 2.93 | 1.24 | CNFpred | | IEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAILALVFV-YLLMLGFFIAFAVKMPVVP-----HGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLG------VIGIFYGAWMAFA--QTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYE |
4 | 3vvnA2 | 0.11 | 0.09 | 3.41 | 1.09 | Neff-PPAS | | ----------------REILKDILRVGLPSSLSQLSMSIAMFFLNSVAITA------------------GGENGVAVFTSAWRITMLGIVPILGMAAATTSVTGAAYGERNVEKLETAYLYAIKIAFMIELAVVAFIMLFAPQVAYLFTAQVIKGDLISALRTLPVFLVLTPFGMMTSAMFQGIGEGEKSLILTIFRTLVMQVGFAYIFVHYTTLGLRGVWIGIVIGNMVAAIVGFLWGRMRIS |
5 | 6d9zF | 0.11 | 0.09 | 3.43 | 1.02 | HHsearch | | -TLSGPQYLGEGLKL-MMRPGLR-LFVLLPLSINLILFIGAINQFSHWDWLMP---S-LPEWL-SFLQFILWPLFVVLLIVFFTFTLIANLIAAPFNGFLAEKVEVVVRGTDDFWAEMVPRTIGRELRKLGYFLPRAIALFIPGLNLIAAPLWLLFGVWMMAVQYIADNHKL--GWNEMLAWLRSKRWACMGFGGITYLVLLIPLV--NLVA---MPAAVAGAVLFWV-----------REGG- |
6 | 3g5uA1 | 0.10 | 0.09 | 3.54 | 1.04 | PROSPECTOR2 | | VSV--LTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTTLVILAISPVLGLSAGIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSYRNAMKKAHVFGITFSFTQAMMYFSYAA |
7 | 6d9zF | 0.08 | 0.07 | 2.64 | 1.22 | SPARKS-K | | -TLSGPQYLGEGLKLMMRLLPLSINLILFIGLIGFAINQFSHWVDWLMPSLPEWLS-------FLQFILWPLFVTLVLLIVFFTFTLIANLIAAPFNGFLAEKVEVVVRGTDDELMAMVPRTIGRELRKLGYFLPRAIALFILSLPLWLLFGVWMMAVQYIDYPADNHKLGW----NEMLAWLRSKRWACMGFGGITYLVLLI--------------------PLVNLVAMPAAVAGAVLFWVR |
8 | 4oo9A1 | 0.13 | 0.11 | 3.81 | 1.44 | FFAS-3D | | SPVQYLR-WGDPAPI------AAVVFACLGLLATLFVTVVFI-----------------IYRDTPVVKSSSRELCYIILAGICLGYLGIGLSPAMSYSALVTKTYR--------AARILAMSSAAQLVIAFILICIQLGIIVALFIMVVAPLGYNGLLILACTFYAFKTRNVPANFNEA---------KYIAFTMYTTCIIWLAFVPIYF--GSNYKIITMCFSVSLSATVALGCMFVPKVYII |
9 | 3rkoB | 0.13 | 0.13 | 4.41 | 1.24 | CNFpred | | GTLNFREMVELAPAHFADGN-NMLMWATLMLLGGAVGKSAQLPLQTWLADAMAG-----PTPVSALIHAATMVTAGVYLIARTHGLFLMTVLHLVGIVGAVTLLLAGFAAVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGSIPLVYLCFLVGGAALSALTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHG |
10 | 3vvnA1 | 0.11 | 0.10 | 3.55 | 1.08 | Neff-PPAS | | ------KTTKGVQLLRGDPKKAIVRLSIPMMIGMSVQTLYNLADGIWVSGL-------------------GPESLAAVGLFFPVFMGIIALAAGLGVGTSSAIARRIGARDKEGADNVAVHSLILSLILGVTITITMLPAIDSLFRSMGAEAVELAIEYARVLLAGAFIIVFNNVGNGILRGEG--DANRAMLAMVLGSGLNIVLDPIFIYTLGFGVVGAAYATLLSMVVTSLFIAYWLFVKRD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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