>PF06782 (462 residues) SKSVVAGKTPTQGGSSLVMVEIRADNGFSFEELESGVWQQVVECFREVLVEALSRVDTLL YENRDAQRYVFKEMRSRTLMTKFGPITFKRRYYWDQEEKRFVFLLDEVLQIAKRQRVSES VRADAVEAAVTAGSFRGAAAELGRRDCQVYVSHEAIRQWSIETGMALAAAQKQRQVTEGG TRKVRFLYIEADGFWPGRQRGKKAEVRLFVIHEGWVERTPAGTEYRLVNRRDFIPDSGRD SWEQLSEFLEREYDLSDTWVIINGDRARWIREGVTWFPKALYQIDRFHLKQELNHVLRHQ PRLLERANAALETNDAGGLLAVLEEARTAETDSKRRGEIRRLVADLRTMPESIRDYRVRL QERGVSVEGLRGLGAAEGAVERYSARLRKVGRSWSERGLKAMMHVLAAYFHGTLRGAVEM VERQLGLESLAAVREKVRHRVVETVGRGIEGVRHGRMPILYA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SKSVVAGKTPTQGGSSLVMVEIRADNGFSFEELESGVWQQVVECFREVLVEALSRVDTLLYENRDAQRYVFKEMRSRTLMTKFGPITFKRRYYWDQEEKRFVFLLDEVLQIAKRQRVSESVRADAVEAAVTAGSFRGAAAELGRRDCQVYVSHEAIRQWSIETGMALAAAQKQRQVTEGGTRKVRFLYIEADGFWPGRQRGKKAEVRLFVIHEGWVERTPAGTEYRLVNRRDFIPDSGRDSWEQLSEFLEREYDLSDTWVIINGDRARWIREGVTWFPKALYQIDRFHLKQELNHVLRHQPRLLERANAALETNDAGGLLAVLEEARTAETDSKRRGEIRRLVADLRTMPESIRDYRVRLQERGVSVEGLRGLGAAEGAVERYSARLRKVGRSWSERGLKAMMHVLAAYFHGTLRGAVEMVERQLGLESLAAVREKVRHRVVETVGRGIEGVRHGRMPILYA | |||||||||||||||||||
1 | 5o9zG | 0.11 | 0.09 | 3.15 | 1.12 | FFAS-3D | --EAARLQPGDTAKAVVAQAVRHLPQSVDIRAKKRVLRKALEEDARIMLSRAVEELWLALARLETYENAR--------------------------------KVLNKARENIPT---DRHIWITAAKLEEANGNTQMVEKIIDRAINGVEINREQWIQDAEECDRTCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECA--------------------RAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLE--------ALLQRAVAHCPKA---EVLWLMGAKSKWLAGDVPAARSILALAFQNDEYERARRLLAKARSSAPTRAAQDLCEEALRHYEDFPKLWMMKGQIEEQ----------KEMMEKAREAYNQGLKKCPHSTQLTRARAILE-KSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSE-------- | |||||||||||||
2 | 5mqfM | 0.09 | 0.08 | 3.16 | 1.02 | Neff-PPAS | --------FTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGRE-EEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTTKAVYDRILDLRIATPQIVINYAMFLEEHKY--------FEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAYDMFNIYIKRAAEIYG----------VTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQA | |||||||||||||
3 | 2wzfA | 0.08 | 0.07 | 2.91 | 1.04 | PROSPECTOR2 | LSKLRALNHTSEIDLQVLFNDL--KSILTLDSIENKIQSFLHGAIKNVIHPGVDEINWNVAKAYPKYYEH----------EEFPDVTF--GGFKVRDSNEFKFKTNIQFSIKPDLFMPSKQQEALKRRREQYPGNRQMKAFARKQVKTDSPLYPLLKAELAHLGKGGNPAAASDLCRWIPELFNEGFYVDIDLPVDSSKIVEGHQITGIMLNMGSIISEPIAPHHRRQEAVCMNDKRTQKMMDTVARYLKNI-----------------YDDPYTALKDTP--LAQTAFFNKCQEERKSIFDLRKGLQDAFRSDSLLQLYDFLGADKFKEVFKLKEAQSKYINEHISEFSEKDLLLN--LISDKPSEISQHTLDFVKAKAMYIDIAKEHYSAFYKPLVEEISGPGAIYNALGGAGSFTTTHLTGPMLPTTPPRVLQVFCDAHDKGPRDLGVLNREGLSWLPS | |||||||||||||
4 | 5h7cA | 0.11 | 0.08 | 2.88 | 0.71 | SPARKS-K | ------KFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDLLAEAKSLNVNQAVKQLAEKAKEA---------------------------------TDKEEVIELAELAKQSTDSELVNEIVKQLAEVAKEATDVIYIVKILAELAKDSELVNEIVKQLAEVAKEAVKILAELAKQ-----------------------------------------------------------STDSELVNEIVKQLEEVAKEATDK--------ELVEHIEKILEELEQQSAFYEILSQRNAFIQSLKDVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEAT------DKELVIYIVKILAELAKQSIVKQLEEVAKEATDKELVEHIEKILEELKKQS----------------- | |||||||||||||
5 | 5ctqA | 0.10 | 0.08 | 2.89 | 1.12 | FFAS-3D | NQLEIESINVYDYNCHVDLIRLLRLEG-ELTKVRMARQKMSEEHVYDLFEKAVKEYGQYSVGGIGQKG---GLEKVRSV-------------------------FERALSVGLHMTKGLALWEAYREFESEAARLEKVHSLFRRQLAIEDPIPESVIQNYNKALQQLEKYKPYEEALLQAEA------------------------------------------------------PRLAEYQAYIDFEMKIGDPARIQ--------LIFERALVENCLVP--DLWIRYSQYLDRQLKVKDLVLSVHNRAIRGVDHQVISVTFEKALNAGFIQATDKELEELRAAFTRALEYLKQEVEERFNESGDPSCVRLCNNMQKARELWDSIMTRGNAKWDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMK-------- | |||||||||||||
6 | 4fcyA | 0.13 | 0.09 | 3.03 | 0.30 | HHpred | ----------KWLPAVQAADEM-LNQGISTK-------------------TAFATVAGHYQVSAS--TLRDK-----------------YYQV--QKFAKP-D-WAAALV----SEFDEDAWQFLIADYLRKPAFRKCYERLELAHGWSIPSRATAFRRIQQLDEAMVVACREEHALMEHLDAMQW--INGDGYLHNVFVNGD--VIRPKTWFWQDV----KTRKILG--WRCDVSENIDSIRLSFMDVVTRYGIPE-DFHITIDNTTGGKGLFLLMG-AKMHW----LEEYVDKHAGPNPQKPDNYGD--RAVDAELFLKTLAEGVAMFNAGRGKSFDDVFEREYARTEEQKRMLL--LPAE---AVNVSRKGEFTLK---VGGSLKGAKNYYNLA-LMLA------------------------------------------------------------ | |||||||||||||
7 | 5h7cA | 0.11 | 0.10 | 3.40 | 0.82 | MUSTER | ------KFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKD--PSQSANLLAEAKSLNVNQAVKQLAEKAKE------------------------ATDKEEVIEIVKELAELAKQSTLVNEIVKQLAEVAKEATDVIYIVKILAELAKQST-DSELVNEIVKQLAEVAKEATDKELV----------IYIVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELEQQSAFYEILSL-----NLNEEQR-------NAFIQSLKDDPSQ-----SANLLAEAKSLN-VNQAVKQLAEKAKEATDKEEVIEIVKELAELADSELVNEIVKQLAEVAKEDKELVIYIVKILAELAKQSTDSELVNEI---VKQLAEVAKEAT---DKELVIYIVKILAELAKQS-SELVNEIVKQLEEVAKEATDKELVEHIEKILEELKKQS---------- | |||||||||||||
8 | 3vycA | 0.09 | 0.08 | 2.93 | 0.85 | CNFpred | -------------ELLLNAHQYLIQLKIEERELFKTTLDYWHNLVADL-EEICSQLRLVIIEN---------------MVR------PEEVLVVENDEGEIVREFVK-------IQLYKSEREVLVYLTHLNDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK--------RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMY---------VVGQYPRFLK-AHWNFLRTVILKLFEFMHE--THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQ----VHTFYKACGIIISEESVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA--------DFYPQLGHIYYNMLQLYRAVSSMISAQVAA--------EGLIATKTPKVRGLRTIKKEILKLVET | |||||||||||||
9 | 2gloA | 0.13 | 0.02 | 0.53 | 0.47 | HHsearch-2 | ---------------------------------------------------------------------------------------------------------------GSRRIFTPHFKLQVLESYRNDGNQRATARKYN-------IHRRQIQKWLQCESNLRSSVANN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 5lj3T | 0.07 | 0.07 | 2.77 | 1.00 | Neff-PPAS | ASSLMKMEMHRKVWDPVIKFVEEKVEELINVLLVKGFTIWSSHILERYQQKRNESLATLALTRNITIKSVYEKYLLNFNYLASLEKLGDNQYEEFNGPDKWLFLILSLAKYYILDSCGDLLKKSLQQFDRIYNFYLLFEQECSQFILGKLKENDDWTEKLQAHMATFESLINLYDIYLNDVALRQDSLVETWMKRVSLQKSAAEKCNVYSEAILKIDPRKVGT-----------PGSFGRLWCSYGDLYWRSN--------AISTARKLWTQSLKVPYPYIEDLEEIYLNWADRELDHVPLRIWSKYIDYLEAYIFNKTKMAYNTVIDLRPAMAENFALFLQNYEVMESFQVYEKTIPLFPPEIQYELWIEYLEVATSHIRFLFEKALKNLCSNGIDCKTIFIAYSVFEERSKSIEILRRGAVIGLESRLQLWRMCISKAESVTRELYQECIQILEFVIKFS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |