Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | RIKGSKGTTDFIKAVVKGRNGKSQGGSAPTLGIIGRLGGLGARPERIGFVSDGDGALAAVAAALKLANMQHKGDVLEGDVIIATHICPDAPTQPHDPVPFMDSPVDIAEMNRNEVDPAMDAILSVDTTKGNRVINHRGFAISPTVKEGYILRVSEDLLDLMQIVTGKLPVVFPITTQDITPYGNGIYHLNSILQPSTATAAPVVGVAITAEVPVPGCATGASHLIDIEAAVRFCLEVAKAFGQGKCRFYDEEEFERLKELYGPMNHLQTLG |
1 | 3n5fA1 | 0.14 | 0.11 | 3.77 | 0.88 | SPARKS-K | | GLFVYEDAAGNLIGRKEGTN-----PDATVVLVGSHLDSV----YNGGCF---DGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGTLPRDAEGISLAEAMKQRKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIV----LCSDEVKRAAEAACQKLSFWLPSAAHDSVQLAPIC---------------PIGMIFVRSQDGVSHSPAEWSTKEDCAAGAEVLYHTVWQLAQG--------------------------- |
2 | 4r12A | 0.13 | 0.11 | 3.85 | 0.50 | FFAS-3D | | -----------IWSSFSSKIDK----EKEIILVMLPFDTTAFFRDLIGADQSSFATVTLLSVIKSLAAVDRSS--WNKEVVFAFWNAFQCKTYNSDKSKCIDPPRADLAFQTQINFTKISTIIELNQIGRAQLDKNLGKYS------LYLHTATSSVTDILDQVASSYTITFKPTTQTELPPSSSMSFLKK------TNKIPVVVITDHDYKYSNPYYGYEQLGSTLNDIVYILSTFIDRIAGGNNNIIDKNFINILYPCF---------- |
3 | 2q43A1 | 0.12 | 0.09 | 3.12 | 0.34 | HHpred | | -----VAIT-GVIGYIGTG-------EPPFVALRADMDALPIQEGVEGKMCGHDGHVTMLLGAAKIL--HEHRHHLQGTVVLIFQPAEEG-----------L--SGAKKMREEGALKNVEAIFGIHLSARGKAASRAGSFL---------TVNNKDLYKQFKKVLGQEAFV----EAAPVM---GSEDFSYFAE-----TIPGHFSLLGMQDASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKA------------------------- |
4 | 4ewtA1 | 0.16 | 0.12 | 3.93 | 0.61 | MUSTER | | EVETNVGPR--IKVTIDS------GKPGKTLAIRAEDTGLSFASQNKGVM-GHDAHTAYMLVLAETLAEM--KDSFTGKVVVIHQPA--------------VPPGGAKTMIENGVLDGVDHVLGVH----VMSTMKTGKVY---YRPGYVLYNDPEFTEYVAKTLKEANLDFGVE--MCEPQPPS--DFAYYAKER-----PSAFIYTGAAVENGEIYHPNISEKSLLISAEAVGTVVLDYLK---------------------------- |
5 | 3b3tA | 0.12 | 0.09 | 3.15 | 0.89 | CNFpred | | QVSHSGYNQKSVVMTITGSEAP-----DEWIVIGGHLDSTI-QSVAPGADDNASGIAAVTEVIRVLSENN---FQPKRSIAFMAYAAEEV-------------LRGSQDLANQYKGKNVVSALQLDMT-NYKGSAQDVVFITDYTDSN----FTQYLTQLMDEYLPSLTYGFDTCG--------YACSDHASWHNAG---YPAAMPFESKFDYNPRIHTQDT-GSHAKKFTQLGLAYAIEMGSATG------------------------- |
6 | 2q43A1 | 0.11 | 0.08 | 3.03 | 0.38 | HHsearch-2 | | KYRYPVAIT-GVIGYIGTG-------EPPFVALRADMDALPIQEGMHACGH--DGHVTMLLGAAKILH--EHRHHLQGTVVLIFQPAEEG-----------L--SGAKKMREEGALKNVEAIFGIHLSARGKAASRAGSFL---------TVNNKDLYKQFKKVLGQEAFV----EAAPVMGSEDFSYFA---E-----TIPGSLLGMQDEYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKAS------------------------ |
7 | 4faiA | 0.07 | 0.06 | 2.41 | 0.66 | Neff-PPAS | | --IKGKLHFHNIIATLNPN-------AERYLVLSCHYDSKYMPGVFLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARHLAKKWHHEGKLDRIDMLVLLD---------------LLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLRYFQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVPDDNASVIDYATTDNLALIIRLFALEYLLA--------------------------- |
8 | 3ic1A1 | 0.12 | 0.09 | 3.14 | 0.34 | HHsearch | | QIEPFNDTLN-LWAKHGT--------SEPVIAFAGHTDVVPTGDEFSAEIIDGRGAAGSLAAMIVAAEYVKANPNHKGTIALLITSDEEA-----------TAKDGTIHVVETLRDEKITYCMVGEPSSAKNLVVKNGRFLTKP------GKLLDSITSAIEETIGITPKAET------GGGTSDGRFIAL-------MGAEVVEFGPLNS--TIHKVNECVSVEDLGKCGEIYHKMLVNLLD---------------------------- |
9 | 2vepA | 0.22 | 0.17 | 5.35 | 0.60 | SP3 | | -----MSKLELLPAVDV-RDGQLVHGESGTETSYGSPLEAGA--EWLHLV-DLDAAFGTGDNRALIAEVAQA---MDIKVELSG---------------GIRDDDTLAAALATGCT-----RVNLGTAALEKVIAEHGIAVGLDVRGTTLTRDGGDLYETLDRLNKEGCARYVVTDKDGTLQGPNLELLKNVCA---ATDRPVVASG------------GVSSLDDLRAIAGLVPAVGKALYAKAF---TLEEALEATS------------ |
10 | 5i4mA2 | 0.12 | 0.10 | 3.41 | 0.89 | PROSPECTOR2 | | ALDTSIKVDEVAKIGATPKGGVCRLALTTMGNVFMRRAGRVADAAPVVTGSDGIYGVLGGLEVIRS--LNDHGIETEHPVEVV--IWTNEEGSRFAPAMVFAGVFPLEYGLSRKDVDKLHAAFELHIEQGPILEAEKTIGVVTDA-------FDSACVAAVRAAFGYSHRDIV------SGAGHDACYLA--------QVAPTSMVFVPCIDGISHNEIEDATPAWIEAGANVLLHAMLSR-------------------------ACEPV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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