Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | AGSLTENCRTPKSRVSRPKTKARLSPYTQYPSFQTERSESDQDSPWGSSPLTDSASPQLLEQGEGLDASCVYRQFPDPRPRCYSLSDEHHHATSDGYTHLHGQGQSCERGRCEAGRYFLGAPPTGREAWWGTARSVLPLSKSSLENHDGYDSSAPHITAIHSYNGRGHWDEDSVVSSPDGGSASDSGDRYQADHYRCSPQEPSKIETLIRATQQMIKEEESRLQLRKGPPDAPLGPANGLPKGPGPCFTPEYTQGPLPLQTVVCRGPSQAISPAPSPAPLSRLSSPGPERLHK |
1 | 5jcss | 0.06 | 0.06 | 2.57 | 1.22 | SPARKS-K | | STVRINEDHQKDSSNKIYNLNMIGMRIWNVIELEEPSEEDLTHILAQKFPILTNLIPNVKSIYMNTKFISLNKAHTRVVSVRLCERLDILFKNNGINKPDQLIQSSVYDSIFSEAADCFAGAIGEFKALIQAIGESLDIASSRISLFLTQHVPTLENLDDSIKIGRKEKLNIQKKSMNSTLFAFTNHSLRLAKMLAKKTVAVPIQENFETLFNATFSLKKNEKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKF |
2 | 6etxG | 0.07 | 0.07 | 2.94 | 1.25 | MUSTER | | KNLVMQFRKVCNHPELFERQETWSPFHISLKPYHISKFIYRHGQIRVFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLIT |
3 | 3cnfT | 0.06 | 0.06 | 2.63 | 2.41 | Neff-PPAS | | -PLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLVYARSTNYTTPVQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVVQRLIPLSSSTYRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTAYTSMNYISNTGQGR---IKHSLAVTGTTEHTIADIT---- |
4 | 5gaoE | 0.07 | 0.07 | 2.92 | 1.62 | PROSPECTOR2 | | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKESNKK |
5 | 5kcs1w | 0.09 | 0.09 | 3.29 | 1.22 | SPARKS-K | | GIDLSTVYQDIKEKLSAEIVIKQK----VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEESIRFQNCSL-FPLYHGSAKSNIGIDNEVITNKFYSSTHRGPSELCGIRLYSGVLHLRDSVRVSEKEKIKSINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKKKIENPHPTVEPSKPEQRDSDPLLRYYVDSTTHEIILSFLKVQMEVISALLQEKYHVEIEITEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSLPLGSGMQYESSVSLGYLNQSFQ |
6 | 3cnfT | 0.12 | 0.11 | 3.88 | 0.61 | FFAS-3D | | -SINNDTRVALDPKPNQIRTTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPA--------ILNYSNPQDAFNWHAPTMALMRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKILEDWRQKGALVEADRLSSSTYVQRLAAISRLSTALLQLSDTYNDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPY----------TYIFTTAYTSMNYISNTGQGRI-- |
7 | 5gooA2 | 0.15 | 0.03 | 0.92 | 0.28 | HHpred | | ------------------------------------------------------------------------------------YRYKGNEFGK---EIANKFNIFSQSIPPEKGGYLAGNLGPGRDFRFFALG-NL-AILAGL----------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 6fmlG | 0.08 | 0.08 | 3.09 | 1.23 | MUSTER | | ERADTSSPFFCGHFAETGSFLREGTNVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNR------LGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDHDKQRFTNITVPSMARFVTDSG---ELLRE |
9 | 2pffB | 0.19 | 0.17 | 5.39 | 0.56 | HHsearch-2 | | ASQLQENDTTLVKTKELIKNYITARPFDK-------KSNS---ALFRAVGEGN--------------AQLVAIQNTDDYFEELTYHVDLITLSELILDAEKVFTQGLNILPSPDKDYLLSIPISCLAHYVVTA--KLLFTRSYLKGATGHSQGLVTAVAIDSWGVRCY--EAYPNTSLPP-------SILE-DSLENNEGVPSPMLSISNLTQEQVNKTNSHLPAGKQVEISLVNGAKNLSRIPFSEFSNRFLPVASPFHS--HLLVPLAKDPVYDTSDLRVLSGSISERIVD |
10 | 3j8dA | 0.08 | 0.08 | 3.21 | 2.33 | Neff-PPAS | | -TQSPASLAVSLGQRATISCRASESVDSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDEDPYTFGGGTKLEIKQVQLLQPGAELVKPGASSCKASGYTFTNWWMHWVRLRPGRGLEWIGRIDPNSDVNKYNEKFENRASLTVDKHSSTAYMQLTSEDSAIYYCARWFFPWYFDVWGTGTTVTVSRADAAPTVSIFPPSSEQLTSGGASVVCFLQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYEKTSTSPIVKSFNRSAKTTAPSVYPLAPVCGGTT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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