Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | MSKKAVPPIVKAQYELYNRKLNRAIKVSGSQKKLDASFVGFSESSNPETGKPHADMSMSAKVKRVNTWLKNFDREYWDNQFASKPIPRPAKQVLKGSSSKSQQRDEGEVVFTRKDSQKSVRTVSYWVCTPEKSMKPLKYKEDENVVEVTFNDLAAQKAGDKLVSILLEINVVGGAVDDKGRVAVLEKDAAVTVDYLLGSPYEAINLVSGLNKINFRSMTDVVDSIPSLLNERKVCVFQNDDSSSFYIRKWANFLQEVSAVLPVGTGKSSTIVLT |
1 | 4lq8A | 0.12 | 0.11 | 3.88 | 0.71 | SPARKS-K | | DSQTSDPTIIQPQKDNLIEQILKDLAALTDRDLEQKRKEIEEEKEKDKTLSTFFGNPIDKALPELKKKLESIEIAGYKNVHNTFSAASGYPGGFKPVQWENHVSASDLRATVVKNDAG--DELCTLNETTVKTKPFTLAKQDGTQVQIEID--FPIKLDQADGSMHLSMVAL----KADGT-KPSKDKAVYFTAHYEEGPNGKPQLKSSPKPLKFAGTGD----------DAIAYIEHGG---EIYTGKYKEMMKEVELNQGQSVDLSQAEDII |
2 | 5voxO | 0.11 | 0.10 | 3.66 | 0.46 | FFAS-3D | | FKIGSLDTLIVESEELSKGKIIEILNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYET---------------------------LSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVESVLRYGLPPHFNIKI- |
3 | 6evuA | 0.16 | 0.11 | 3.63 | 0.33 | HHpred | | --------------EPYEKEVAEYNKH-----KNENSYLVFDQSVVTIKGGK----FIKAT-----DFNKVNA---------G--DSKDIFTKLRKDGGKATGNFQNSFVKEAN----LGSNGGYAVLL-----------EKNKPVTVTYTGLNASYLGRKITKAEFVYELQSSPSQSGTLNAVFSNDPIITAFI--GTNRVDVLPDKDSFAYALSSLNSSGGHAEFVFNNAFKYINGSY---------------------------------- |
4 | 3cvzA | 0.18 | 0.16 | 5.20 | 0.52 | MUSTER | | TGTQG---VVKNDWKKAVKQLQDGLKDN-SIGKITVSFNDGVVEVAPKSANKKADRAAEKLYNLVNTQLDKLG-DYVD--FS---VDYNLENKIITNQ------ADAEAIVTKLNSLN------------EKTLIDIATKDTFGMVSKTQDSEGKNVAATKALKVVATFGLKSGGSEDTGYVVEMKAGA---VEDKYGKVGDS----TAGIAINLPSTGLEYAGKGTTIDFNKTLKVDVTGGSTPSAVAVSGFVTKDDTDLA-KSGTINVRVIN |
5 | 4dngA | 0.11 | 0.07 | 2.39 | 0.67 | CNFpred | | ----------DDIIMMIARETGGTII------------------------------KSTIELEQTIAILDE-----AMTYTGELGGVKEVPSDI-----------------------EGKTNKIYRLPL--------------GVISSISP-------FNFPMNLSMRSIAPAIA---LGNSVVHKPDTAISGGTIIAKAFEHAGLPAGVLNVMLTDVKEIGDGMLTNP-IPRLISFTGS---TAVGRHIGEIAGRA--------FKRMALELG |
6 | 1vt4I | 0.18 | 0.17 | 5.46 | 1.12 | HHsearch-2 | | MSKDAV----SGTLRLFWTLLSKQKFVEEVLRI------NYKFLMSPIKTERQP--SMMTRMYRDRLYNDNQVFAKYNVSRLQQAELRPAKNVLIDGVLGS-----GKTWV-ALDVQCKMDFKIFWLNLKNCTVQKLLYQIDPNWHSIQAELRRLLKSKPYENCLLVLLNVAWNAFNLSCKILLTTRFKATTTHISLDHHSMTLTLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATVNCDPAEYRKMFDRLLHKYSLVEK--QPKESTISIP |
7 | 3cvzA | 0.13 | 0.12 | 4.04 | 0.76 | Neff-PPAS | | TTGTQGYTVVKNDWKKAVKQLQDGLKDN----SIGKITVSFNDGVVGEVASANKKADRDAAAEKLYNLVNTQLDKLGDGDYVDFSVDYNLENKIITN--------QADAEAIVTKLNS----------LNEKTLIDIATKDTFGMVSKTQDSEGKNVAATKKVKDVATFGLKSGGSEDTGYVVEMKAGAV-------EDKYGKVGDSTAGIAINLPSTGLEYAGKGTTIDFNKTLKVDVTGGSTPSAVAVSGFVTKDDTDLA-KSGTINVRVIN |
8 | 2kdoA2 | 0.16 | 0.08 | 2.68 | 0.47 | HHsearch | | -----------------FRDI--------------ATIVA-DKCVNPETKRPYTV-------ILIERAMKD-------IHYSVK-TNKSTKQQALEVIKQLK------EKMKIERAHM-----RLRFILPVNEGKKLKEKPLIK--VIESEDYG----Q---Q-LEIVCLIDPGCFRE------------ID-E-LIK------KETKGKGSLEVLNLVEEGDEKFE----------------------------------------------- |
9 | 5n8oA5 | 0.10 | 0.09 | 3.50 | 0.54 | SP3 | | EIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLKGEA--------FPDIPMTLYEAIVRDYTGRTPEAREQTLIVTH--LNEDRRVLN--SMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWEKNPDALALVDNVYHRIAGISKDDG-LITLQDAEGNTRLISPREAVAEGVTLYTPDKIRVG---TGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRP |
10 | 5a99A | 0.09 | 0.07 | 2.80 | 0.89 | PROSPECTOR2 | | AYHGAPHEIRNRYQHDRALEILDRQYSRDSYYMKDSSLQIIRQLVLPNYRINDEKYYGRSELRHLRDGLLSDNGG-------------------RSQHDKGMNEPVSFQFIVQGDVDLGSVWFRVNKYNNISSSSFAMEAVSERAENYIGPLMRPIRYFDREMAWSYVGKFDGILFPCHPVISFA----------VQRANRDGAGLYNGEN---------IYKTLIRLNDSPDLYAHYDD-----EETSVANYWTRFQYLYRTKCDI-----AV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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