Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | VGLTIWRLPGGGFAVGRFSGGRRAGERELPVVYTEMDGGFNNSGAPRRISWASRRSRSRESGGSLGRAFRNIFSFLGRFRSSSSSSSRSTSEPGSITRSHSHSSSVFSRYVR |
1 | 3bogA | 0.20 | 0.13 | 4.29 | 1.01 | SPARKS-K | | DGAHGVGCPGTA---GA-AGSVGGPGCDGG---HGGNGGNGNPGCAGGVGGAGGASGGTGVGGRGGK----------GGSGTPKGADGAPGAP------------------- |
2 | 2bhvB | 0.14 | 0.12 | 3.95 | 0.36 | FFAS-3D | | -------IPKGSKVIGYYSNNNKMGEYRLDIVWSRI-------ITPHGINIMLTNAKGNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALDYLLMQLMRQS------- |
3 | 3gk6A | 0.10 | 0.04 | 1.33 | 0.25 | HHpred | | SESVKTKVSSGKYVTFSATGEP----QVVIDLWNEVWNYFA-CPHK------------------------------------------------------------------ |
4 | 2o36A | 0.16 | 0.15 | 5.06 | 0.75 | MUSTER | | SGEVVGKFYGHAACFGLQPGLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVRTYFHEFGHVMHQLCQAEFAMF----SGTHVETDFVEAPSQMLENWVWEQEPLLRMSR |
5 | 1q3xA | 0.28 | 0.09 | 2.73 | 0.63 | CNFpred | | -GALVFLDSERWFVGGIVSWGSNCGEAGQYGVYTKVI--------------------------------------------------------------------------- |
6 | 5hgqA | 0.14 | 0.12 | 4.29 | 0.48 | HHsearch-2 | | NDIVQKRE-KLIFYDLHGE------GTRLQVLANARFHAFDKRGDIIGVNGYPARS---KSGERMISFLRRYLRVFRNEGIDQTHNPETSCEAHPLAKGLTERFELFNAYTE |
7 | 6e5pI | 0.05 | 0.04 | 2.10 | 0.86 | Neff-PPAS | | ---RASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPD-----WGVAYMEFSGLTPADTRRGSCDYCGDFPWQYWCQGTVVVV---- |
8 | 5yugA1 | 0.24 | 0.07 | 2.22 | 0.30 | HHsearch | | EWKKGWPLRSGLLADLCYRCGS-AYES---SLFCEQF--------------------------------------------------------------------------- |
9 | 5a1kA | 0.15 | 0.14 | 4.82 | 0.62 | SP3 | | GGLKYKA---GGVASG-LNHVLTNDLTAKVVRATEVPDSFNKGDLGTEIYQWCGSSCNKYERLKANQVATGIRYNERKGREKPELPDGGDDDDIIADISNRKMAKLYMVSDS |
10 | 1h31b | 0.08 | 0.08 | 3.12 | 0.49 | PROSPECTOR2 | | AEVAPGDVAIDGQ-----GHVARPLTDAPGDLMTDRSTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLLTQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|